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3JAB

Domain organization and conformational plasticity of the G protein effector, PDE6

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, M)
GafA domain of cone phosphodiesterase 6Cpolymer18020725.92UniProt (by SIFTS) (A0A0M3KKT0)Bos taurus (bovine)cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'
2C, D
(B, N)
GafB domain of phosphodiesterase 2Apolymer18520671.42Pfam (PF01590)
UniProt (by SIFTS) (P14099)
Bos taurus (bovine)cGMP-dependent 3',5'-cyclic phosphodiesterase
3E, G
(C, O)
phosphodiesterase 5/6 chimera catalytic domainpolymer33038282.12Pfam (PF00233)
UniProt (by SIFTS) (Q28156)
UniProt (by SIFTS) (P16586)
Bos taurus (bovine)cGMP-specific 3',5'-cyclic phosphodiesterase, cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' chimera
4F, H
(D, P)
phosphodiesterase 6 gamma subunit inhibitory peptidepolymer182185.42UniProt (P04972)Bos taurus (bovine)Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma, GMP-PDE gamma
5I, K
(L, R)
IgG1-kappa 2E8 light chainpolymer21423541.02Mus musculus (mouse)
6J, L
(H, Q)
IgG1-kappa 2E8 heavy chainpolymer22123878.62Mus musculus (mouse)
7M, N, O, P
(C, O)
3-ISOBUTYL-1-METHYLXANTHINEnon-polymer222.24Chemie (IBM)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight258568.9
Non-Polymers*Number of molecules4
Total formula weight889.0
All*Total formula weight259457.9
*Water molecules are not included.

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PDB entries from 2026-01-14

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