3J7P
Structure of the 80S mammalian ribosome bound to eEF2
This is a non-PDB format compatible entry.
Replaces: 3J74Replaces: 1VX3Replaces: 1VX4Replaces: 1VX5Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 5 | 28S ribosomal RNA | polymer | 3664 | 1187230.0 | 1 | Sus scrofa (pig) | ||
| 2 | 7 | 5S ribosomal RNA | polymer | 120 | 38691.9 | 1 | Sus scrofa (pig) | ||
| 3 | 8 | 5.8S ribosomal RNA | polymer | 156 | 50143.6 | 1 | Sus scrofa (pig) | ||
| 4 | A | Ribosomal protein uL2 | polymer | 257 | 28088.9 | 1 | UniProt (F2Z567) Pfam (PF00181) Pfam (PF03947) In PDB | Sus scrofa (pig) | |
| 5 | B | Ribosomal protein uL3 | polymer | 394 | 44759.4 | 1 | Sus scrofa (pig) | ||
| 6 | C | Ribosomal protein uL4 | polymer | 367 | 41635.1 | 1 | Sus scrofa (pig) | ||
| 7 | D | Ribosomal protein uL18 | polymer | 297 | 34417.7 | 1 | UniProt (F1S530) Pfam (PF17144) Pfam (PF14204) UniProt (by SIFTS) (A0A8D0MVZ5) In PDB | Sus scrofa (pig) | |
| 8 | E | Ribosomal protein eL6 | polymer | 236 | 27052.2 | 1 | Sus scrofa (pig) | ||
| 9 | F | Ribosomal protein uL30 | polymer | 225 | 26590.7 | 1 | Sus scrofa (pig) | ||
| 10 | G | Ribosomal protein eL8 | polymer | 266 | 30166.9 | 1 | UniProt (I3LVI8) In PDB | Sus scrofa (pig) | |
| 11 | H | Ribosomal protein uL6 | polymer | 192 | 21899.5 | 1 | UniProt (I3LP78) Pfam (PF00347) In PDB | Sus scrofa (pig) | |
| 12 | I | Ribosomal protein uL16 | polymer | 213 | 24465.8 | 1 | Sus scrofa (pig) | ||
| 13 | J | Ribosomal protein uL5 | polymer | 178 | 20248.4 | 1 | UniProt (Q29205) Pfam (PF00281) Pfam (PF00673) In PDB | Sus scrofa (pig) | |
| 14 | K | Ribosomal protein uL11 | polymer | 163 | 17689.5 | 1 | UniProt (Q6QAS5) Pfam (PF03946) Pfam (PF00298) In PDB | Sus scrofa (pig) | |
| 15 | L | Ribosomal protein eL13 | polymer | 211 | 24365.8 | 1 | UniProt (I3LSD3) Pfam (PF01294) In PDB | Sus scrofa (pig) | |
| 16 | M | Ribosomal protein eL14 | polymer | 213 | 23383.1 | 1 | UniProt (A1XQU3) Pfam (PF01929) In PDB | Sus scrofa (pig) | |
| 17 | N | Ribosomal protein eL15 | polymer | 204 | 24207.3 | 1 | UniProt (I3LK33) In PDB | Sus scrofa (pig) | |
| 18 | O | Ribosomal protein uL13 | polymer | 204 | 23765.5 | 1 | UniProt (F1RI01) In PDB | Sus scrofa (pig) | |
| 19 | P | Ribosomal protein uL22 | polymer | 153 | 17757.6 | 1 | Sus scrofa (pig) | ||
| 20 | Q | Ribosomal protein eL18 | polymer | 188 | 21588.6 | 1 | UniProt (I3L6F1) Pfam (PF17135) UniProt (by SIFTS) (Q95342) In PDB | Sus scrofa (pig) | |
| 21 | R | Ribosomal protein eL19 | polymer | 196 | 23567.3 | 1 | UniProt (F2Z546) Pfam (PF01280) In PDB | Sus scrofa (pig) | |
| 22 | S | Ribosomal protein eL20 | polymer | 224 | 26103.4 | 1 | UniProt (F1S935) Pfam (PF01775) UniProt (by SIFTS) (A0A4X1UAP0) In PDB | Sus scrofa (pig) | |
| 23 | T | Ribosomal protein eL21 | polymer | 160 | 18610.0 | 1 | UniProt (F1RTJ9) Pfam (PF01157) UniProt (by SIFTS) (P49666) In PDB | Sus scrofa (pig) | |
| 24 | U | Ribosomal protein eL22 | polymer | 128 | 14785.0 | 1 | UniProt (P67985) Pfam (PF01776) In PDB | Sus scrofa (pig) | |
| 25 | V | Ribosomal protein uL14 | polymer | 140 | 14892.5 | 1 | UniProt (P62831) Pfam (PF00238) In PDB | Sus scrofa (pig) | |
| 26 | W | Ribosomal protein eL24 | polymer | 157 | 17825.1 | 1 | Sus scrofa (pig) | ||
| 27 | X | Ribosomal protein uL23 | polymer | 156 | 17740.2 | 1 | UniProt (F2Z522) Pfam (PF00276) In PDB | Sus scrofa (pig) | |
| 28 | Y | Ribosomal protein uL24 | polymer | 145 | 17303.4 | 1 | UniProt (I3L7Y1) Pfam (PF16906) Pfam (PF00467) In PDB | Sus scrofa (pig) | |
| 29 | Z | Ribosomal protein eL27 | polymer | 136 | 15835.8 | 1 | UniProt (A1XQU5) Pfam (PF00467) Pfam (PF01777) In PDB | Sus scrofa (pig) | |
| 30 | a | Ribosomal protein uL15 | polymer | 148 | 16631.5 | 1 | UniProt (F1RGC0) Pfam (PF00828) In PDB | Sus scrofa (pig) | |
| 31 | b | Ribosomal protein eL29 | polymer | 160 | 17545.8 | 1 | UniProt (Q95281) Pfam (PF01779) In PDB | Sus scrofa (pig) | |
| 32 | c | Ribosomal protein eL30 | polymer | 115 | 12805.1 | 1 | UniProt (F2Z554) Pfam (PF01248) In PDB | Sus scrofa (pig) | |
| 33 | d | Ribosomal protein eL31 | polymer | 125 | 14494.9 | 1 | UniProt (P62901) Pfam (PF01198) In PDB | Sus scrofa (pig) | |
| 34 | e | Ribosomal protein eL32 | polymer | 135 | 15898.9 | 1 | UniProt (Q6QAT0) Pfam (PF01655) In PDB | Sus scrofa (pig) | |
| 35 | f | Ribosomal protein eL33 | polymer | 110 | 12564.7 | 1 | UniProt (F2Z5Q8) In PDB | Sus scrofa (pig) | |
| 36 | g | Ribosomal protein eL34 | polymer | 117 | 13326.1 | 1 | UniProt (F2Z5B9) Pfam (PF01199) UniProt (by SIFTS) (Q29223) In PDB | Sus scrofa (pig) | |
| 37 | h | Ribosomal protein uL29 | polymer | 123 | 14591.6 | 1 | UniProt (Q29361) Pfam (PF00831) In PDB | Sus scrofa (pig) | |
| 38 | i | Ribosomal protein eL36 | polymer | 105 | 12290.9 | 1 | UniProt (F2Z5K6) In PDB | Sus scrofa (pig) | |
| 39 | j | Ribosomal protein eL37 | polymer | 86 | 10102.9 | 1 | Sus scrofa (pig) | ||
| 40 | k | Ribosomal protein eL38 | polymer | 70 | 8238.9 | 1 | UniProt (F2Z568) Pfam (PF01781) UniProt (by SIFTS) (A0A4X1VLH7) In PDB | Sus scrofa (pig) | |
| 41 | l | Ribosomal protein eL39 | polymer | 51 | 6426.8 | 1 | UniProt (K7GP63) Pfam (PF00832) In PDB | Sus scrofa (pig) | |
| 42 | m | Ribosomal protein eL40 | polymer | 128 | 14758.4 | 1 | UniProt (P63053) Pfam (PF00240) Pfam (PF01020) In PDB | Sus scrofa (pig) | |
| 43 | n | Ribosomal protein eL41 | polymer | 25 | 3473.5 | 1 | Sus scrofa (pig) | ||
| 44 | o | Ribosomal protein eL42 | polymer | 106 | 12477.0 | 1 | UniProt (P83884) Pfam (PF00935) In PDB | Sus scrofa (pig) | |
| 45 | p | Ribosomal protein eL43 | polymer | 91 | 10168.2 | 1 | Sus scrofa (pig) | ||
| 46 | q | Ribosomal protein uL10 | polymer | 202 | 22217.8 | 1 | Sus scrofa (pig) | ||
| 47 | r | Ribosomal protein eL28 | polymer | 125 | 14301.8 | 1 | Sus scrofa (pig) | ||
| 48 | 4 | Eukaryotic elongation factor 2 | polymer | 856 | 95232.9 | 1 | Sus scrofa (pig) | ||
| 49 | S2 | 18S ribosomal RNA | polymer | 1742 | 561958.8 | 1 | Sus scrofa (pig) | ||
| 50 | SA | Ribosomal protein uS2 | polymer | 295 | 32958.0 | 1 | UniProt (Q4GWZ2) Pfam (PF00318) Pfam (PF16122) In PDB | Sus scrofa (pig) | |
| 51 | SB | Ribosomal protein eS1 | polymer | 264 | 29931.9 | 1 | UniProt (B6V8C8) Pfam (PF01015) In PDB | Sus scrofa (pig) | |
| 52 | SC | Ribosomal protein uS5 | polymer | 218 | 24091.5 | 1 | Sus scrofa (pig) | ||
| 53 | SD | Ribosomal protein uS3 | polymer | 243 | 26729.4 | 1 | UniProt (Q0Z8U2) Pfam (PF07650) Pfam (PF00189) In PDB | Sus scrofa (pig) | |
| 54 | SE | Ribosomal protein eS4 | polymer | 263 | 29654.9 | 1 | UniProt (F1RQ91) In PDB | Sus scrofa (pig) | |
| 55 | SF | Ribosomal protein uS7 | polymer | 204 | 22913.5 | 1 | UniProt (F2Z5E6) Pfam (PF00177) In PDB | Sus scrofa (pig) | |
| 56 | SG | Ribosomal protein eS6 | polymer | 249 | 28751.9 | 1 | Sus scrofa (pig) | ||
| 57 | SH | Ribosomal protein eS7 | polymer | 194 | 22168.9 | 1 | UniProt (I3L5B2) Pfam (PF01251) In PDB | Sus scrofa (pig) | |
| 58 | SI | Ribosomal protein eS8 | polymer | 208 | 24263.4 | 1 | UniProt (F2Z5F5) Pfam (PF01201) In PDB | Sus scrofa (pig) | |
| 59 | SJ | Ribosomal protein uS4 | polymer | 194 | 22641.6 | 1 | Sus scrofa (pig) | ||
| 60 | SK | Ribosomal protein eS10 | polymer | 165 | 18967.9 | 1 | UniProt (F1RZ28) Pfam (PF03501) In PDB | Sus scrofa (pig) | |
| 61 | SL | Ribosomal protein uS17 | polymer | 158 | 18468.8 | 1 | UniProt (F2Z4Y8) Pfam (PF16205) Pfam (PF00366) In PDB | Sus scrofa (pig) | |
| 62 | SM | Ribosomal protein eS12 | polymer | 124 | 13776.0 | 1 | Sus scrofa (pig) | ||
| 63 | SN | Ribosomal protein uS15 | polymer | 151 | 17259.4 | 1 | Sus scrofa (pig) | ||
| 64 | SO | Ribosomal protein uS11 | polymer | 151 | 16302.8 | 1 | Sus scrofa (pig) | ||
| 65 | SP | Ribosomal protein uS19 | polymer | 145 | 17076.2 | 1 | UniProt (P62844) Pfam (PF00203) In PDB | Sus scrofa (pig) | |
| 66 | SQ | Ribosomal protein uS9 | polymer | 146 | 16477.4 | 1 | UniProt (Q29201) Pfam (PF00380) In PDB | Sus scrofa (pig) | |
| 67 | SR | Ribosomal protein eS17 | polymer | 135 | 15552.1 | 1 | UniProt (Q6QAP7) Pfam (PF00833) In PDB | Sus scrofa (pig) | |
| 68 | SS | Ribosomal protein uS13 | polymer | 152 | 17759.8 | 1 | UniProt (P62272) Pfam (PF00416) In PDB | Sus scrofa (pig) | |
| 69 | ST | Ribosomal protein eS19 | polymer | 145 | 16091.6 | 1 | UniProt (F1RGG1) Pfam (PF01090) In PDB | Sus scrofa (pig) | |
| 70 | SU | Ribosomal protein uS10 | polymer | 119 | 13357.7 | 1 | UniProt (A1XQU9) Pfam (PF00338) In PDB | Sus scrofa (pig) | |
| 71 | SV | Ribosomal protein eS21 | polymer | 83 | 9124.4 | 1 | UniProt (P63221) Pfam (PF01249) In PDB | Sus scrofa (pig) | |
| 72 | SW | Ribosomal protein uS8 | polymer | 130 | 14865.6 | 1 | Sus scrofa (pig) | ||
| 73 | SX | Ribosomal protein uS12 | polymer | 143 | 15854.7 | 1 | UniProt (Q6SA96) Pfam (PF00164) In PDB | Sus scrofa (pig) | |
| 74 | SY | Ribosomal protein eS24 | polymer | 132 | 15366.3 | 1 | Sus scrofa (pig) | ||
| 75 | SZ | Ribosomal protein es25 | polymer | 125 | 13776.2 | 1 | Sus scrofa (pig) | ||
| 76 | Sa | Ribosomal protein eS26 | polymer | 115 | 13047.5 | 1 | UniProt (P49171) Pfam (PF01283) In PDB | Sus scrofa (pig) | |
| 77 | Sb | Ribosomal protein eS27 | polymer | 84 | 9480.2 | 1 | Sus scrofa (pig) | ||
| 78 | Sc | Ribosomal protein eS28 | polymer | 69 | 7855.1 | 1 | UniProt (Q6QAT1) Pfam (PF01200) In PDB | Sus scrofa (pig) | |
| 79 | Sd | Ribosomal protein uS14 | polymer | 56 | 6612.7 | 1 | UniProt (Q6QAP6) Pfam (PF00253) In PDB | Sus scrofa (pig) | |
| 80 | Se | Ribosomal protein eS30 | polymer | 133 | 14411.7 | 1 | Sus scrofa (pig) | ||
| 81 | Sf | Ribosomal protein eS31 | polymer | 156 | 18004.0 | 1 | UniProt (F2Z5U0) Pfam (PF01599) In PDB | Sus scrofa (pig) | |
| 82 | Sg | Ribosomal protein RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (P63246) Pfam (PF00400) In PDB | Sus scrofa (pig) | |
| 83 | 5, 8, S2, P, V... | MAGNESIUM ION | non-polymer | 24.3 | 166 | Chemie (MG) | |||
| 84 | j, m, o, Sa | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 82 |
| Total formula weight | 3403025.1 | |
| Non-Polymers* | Number of molecules | 170 |
| Total formula weight | 4296.3 | |
| All* | Total formula weight | 3407321.4 |
