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3J79

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A28S ribosomal RNApolymer37881216212.11Plasmodium falciparum
2B5S ribosomal RNApolymer11938410.91Plasmodium falciparum
3C5.8S ribosomal RNApolymer15951206.51Plasmodium falciparum
4D60S ribosomal protein uL2polymer26028065.01UniProt (Q8I3T9)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Plasmodium falciparum
5E60S ribosomal protein uL3polymer38644318.21UniProt (Q8IJC6)
Pfam (PF00297)
In PDB
Plasmodium falciparum
6F60S ribosomal protein uL4polymer41146311.71UniProt (Q8I431)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Plasmodium falciparum
7G60S ribosomal protein uL5polymer17320268.71UniProt (Q8IBQ6)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Plasmodium falciparum
8H60S ribosomal protein uL6polymer19021638.61UniProt (Q8IE85)
Pfam (PF00347)
In PDB
Plasmodium falciparum
9I60S ribosomal protein eL6polymer22125587.61UniProt (Q8IDV1)
In PDB
Plasmodium falciparum
10J60S ribosomal protein eL8polymer28332760.51UniProt (Q8ILL2)
Pfam (PF01248)
In PDB
Plasmodium falciparum
11K60S ribosomal protein uL13polymer20223805.31UniProt (Q8IJZ7)
Pfam (PF00572)
In PDB
Plasmodium falciparum
12L60S ribosomal protein eL13polymer21525508.21UniProt (Q8IAX6)
Pfam (PF01294)
In PDB
Plasmodium falciparum
13M60S ribosomal protein uL14polymer13915015.71UniProt (Q8IE09)
Pfam (PF00238)
In PDB
Plasmodium falciparum
14N60S ribosomal protein eL14polymer16519340.41UniProt (Q8ILE8)
Pfam (PF01929)
In PDB
Plasmodium falciparum
15O60S ribosomal protein uL15polymer14816765.81UniProt (C6KT23)
Pfam (PF00828)
In PDB
Plasmodium falciparum
16P60S ribosomal protein eL15polymer20524197.71UniProt (C0H4A6)
Pfam (PF00827)
In PDB
Plasmodium falciparum
17Q60S ribosomal protein uL16polymer21925265.51UniProt (Q8ILV2)
Pfam (PF00252)
In PDB
Plasmodium falciparum
18R60S ribosomal protein uL18polymer29434067.41UniProt (Q8ILL3)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Plasmodium falciparum
19S60S ribosomal protein eL18polymer18721508.81UniProt (C0H5G3)
Pfam (PF17135)
In PDB
Plasmodium falciparum
20T60S ribosomal protein eL19polymer18221641.11UniProt (C6KSY6)
Pfam (PF01280)
In PDB
Plasmodium falciparum
21U60S ribosomal protein eL20polymer18421793.61UniProt (Q8IDS6)
Pfam (PF01775)
In PDB
Plasmodium falciparum
22V60S ribosomal protein eL21polymer16118840.21UniProt (Q8ILK3)
Pfam (PF01157)
In PDB
Plasmodium falciparum
23W60S ribosomal protein uL22polymer20323469.91UniProt (Q8IDI5)
Pfam (PF00237)
In PDB
Plasmodium falciparum
24X60S ribosomal protein eL22polymer13916422.91UniProt (Q8IB51)
Pfam (PF01776)
In PDB
Plasmodium falciparum
25Y60S ribosomal protein uL23polymer19022152.71UniProt (Q8IE82)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Plasmodium falciparum
26Z60S ribosomal protein uL24polymer12614855.71UniProt (O77364)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Plasmodium falciparum
27060S ribosomal protein eL24polymer16219295.91UniProt (Q8IEM3)
Pfam (PF01246)
In PDB
Plasmodium falciparum
28160S ribosomal protein eL27polymer14616785.21UniProt (Q8IKM5)
Pfam (PF01777)
In PDB
Plasmodium falciparum
29260S ribosomal protein eL28polymer12714437.81UniProt (Q8IHU0)
Pfam (PF01778)
In PDB
Plasmodium falciparum
30360S ribosomal protein uL29polymer12414787.81UniProt (Q8IIB4)
Pfam (PF00831)
In PDB
Plasmodium falciparum
31460S ribosomal protein eL29polymer678041.61UniProt (C6S3J6)
Pfam (PF01779)
In PDB
Plasmodium falciparum
32560S ribosomal protein uL30polymer25730593.21UniProt (O97250)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Plasmodium falciparum
33660S ribosomal protein eL30polymer10811794.81UniProt (Q8IJK8)
Pfam (PF01248)
In PDB
Plasmodium falciparum
34760S ribosomal protein eL31polymer12014099.91UniProt (Q8I463)
Pfam (PF01198)
In PDB
Plasmodium falciparum
35860S ribosomal protein eL32polymer13115565.81UniProt (Q8I3B0)
Pfam (PF01655)
In PDB
Plasmodium falciparum
36960S ribosomal protein eL33polymer14016306.41UniProt (Q8IHT9)
Pfam (PF01247)
In PDB
Plasmodium falciparum
37a60S ribosomal protein eL34polymer15017407.01UniProt (Q8IBY4)
Pfam (PF01199)
In PDB
Plasmodium falciparum
38b60S ribosomal protein eL36polymer11212825.41UniProt (Q8I713)
Pfam (PF01158)
In PDB
Plasmodium falciparum
39c60S ribosomal protein eL37polymer9210571.61UniProt (C0H4L5)
Pfam (PF01907)
In PDB
Plasmodium falciparum
40d60S ribosomal protein eL38polymer8710341.71UniProt (Q8II62)
Pfam (PF01781)
In PDB
Plasmodium falciparum
41e60S ribosomal protein eL39polymer516540.91UniProt (C0H4H3)
Pfam (PF00832)
In PDB
Plasmodium falciparum
42f60S ribosomal protein eL40polymer12814645.21UniProt (Q8ID50)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Plasmodium falciparum
43g60S ribosomal protein eL41polymer395108.31UniProt (C6S3G4)
Pfam (PF05162)
In PDB
Plasmodium falciparum
44h60S ribosomal protein eL43polymer9610826.11UniProt (O96184)
Pfam (PF01780)
In PDB
Plasmodium falciparum
45i60S ribosomal protein eL44polymer10412194.91UniProt (O97231)
Pfam (PF00935)
In PDB
Plasmodium falciparum
46A, B, C, M, QMAGNESIUM IONnon-polymer24.3163Chemie (MG)
47a, c, f, h, iZINC IONnon-polymer65.45Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains45
Total formula weight2131600.0
Non-Polymers*Number of molecules168
Total formula weight4288.8
All*Total formula weight2135888.8
*Water molecules are not included.

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PDB entries from 2024-09-18

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