3FC9
Crystal structure of the Mimivirus NDK +Kpn-N62L double mutant complexed with CDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Nucleoside diphosphate kinase | polymer | 146 | 16627.8 | 6 | UniProt (Q5UQL3) Pfam (PF00334) | Acanthamoeba polyphaga mimivirus | NDP kinase, NDK |
| 2 | G (A) | CYTIDINE-5'-TRIPHOSPHATE | non-polymer | 483.2 | 1 | Chemie (CTP) | |||
| 3 | H, J, L, N, P (B, C, D, E, F) | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
| 4 | I, K, M, O, Q (B, C, D, E, F) | CYTIDINE-5'-DIPHOSPHATE | non-polymer | 403.2 | 5 | Chemie (CDP) | |||
| 5 | R, S, T, U, V... (A, B, C, D, E...) | water | water | 18.0 | 59 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 2 - 141 (UniProt: Q5UQL3)
| PDB | External Database | Details |
|---|---|---|
| Tyr -4 | - | expression tag |
| Lys -3 | - | expression tag |
| Lys -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Leu 1 | - | expression tag |
| Leu 62 | Asn 62 | engineered mutation |
| Thr 92 | - | SEE REMARK 999 |
| Asn 93 | - | SEE REMARK 999 |
| Pro 94 | - | SEE REMARK 999 |
| Leu 95 | - | SEE REMARK 999 |
| Ala 96 | Ile 92 | SEE REMARK 999 |
| Ser 97 | Leu 93 | SEE REMARK 999 |
| Ala 98 | Thr 94 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 99767.1 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 2620.6 | |
| All* | Total formula weight | 102387.6 |
