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3DXT

Crystal structure of the catalytic core domain of JMJD2D

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
JmjC domain-containing histone demethylation protein 3Dpolymer35440796.31UniProt (Q0VF39)
Pfam (PF02375)
Pfam (PF02373)
UniProt (by SIFTS) (Q6B0I6)
Homo sapiens (human)Jumonji domain-containing protein 2D
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C, D, E
(A)
SULFATE IONnon-polymer96.13Chemie (SO4)
4F, G, H, I
(A)
GLYCEROLnon-polymer92.14Chemie (GOL)
5J
(A)
waterwater18.0291Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight40796.3
Non-Polymers*Number of molecules8
Total formula weight722.0
All*Total formula weight41518.3
*Water molecules are not included.

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PDB entries from 2025-06-18

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