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3DXT

Crystal structure of the catalytic core domain of JMJD2D

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 355
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 801
ChainResidue
AHOH520
AHOH537
APRO113
ALYS124
AASN128
ATRP185
ALYS186

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 802
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH555
AHOH556
AHOH605

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 803
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 701
ChainResidue
ASER80
ATHR87
ACYS168
ALEU230
APHE231
AHOH468
AHOH488

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 702
ChainResidue
APHE31
ALYS150
AGLN151
ATRP152
AASN153
AHOH507

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 703
ChainResidue
APHE189
AASN202
ALYS210
AHOH500
AGOL704

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 704
ChainResidue
ATYR179
ATYR181
AGLU194
ASER200
AALA292
AASN294
AHOH499
AGOL703

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-07-31

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