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2Y7H

Atomic model of the DNA-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEINpolymer46451468.21UniProt (P05719)
Pfam (PF01420)
ESCHERICHIA COLIHSDS TYPE I DNA RESTRICTION SPECIFICITY SUBUNIT, S.ECOKI, TYPE I RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN, S PROTEIN
2B, C
(B, C)
TYPE I RESTRICTION ENZYME ECOKI M PROTEINpolymer52959378.32UniProt (P08957)
Pfam (PF12161)
Pfam (PF02384)
ESCHERICHIA COLIHSDM TYPE I DNA RESTRICTION METHYLTRANSFERASE SUBUNIT, M.ECOKI
3D
(D)
5'-D(*GP*TP*TP*CP*AP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*GP*CP*AP*AP*C)-3'polymer206119.01ESCHERICHIA COLI
4E
(E)
5'-D(*GP*TP*TP*GP*CP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*TP*GP*AP*AP*C)-3'polymer206150.01ESCHERICHIA COLI
5F, G
(B, C)
S-ADENOSYLMETHIONINEnon-polymer398.42Chemie (SAM)
PubChem (5136)
PubChem (34755)
PubChem (58633578)
PubChem (60038769)
PubChem (58766358)
PubChem (73897310)
PubChem (9865603)
PubChem (87224684)
PubChem (12312798)
PubChem (131697735)
PubChem (145712080)
PubChem (132988922)
PubChem (134692588)
PubChem (135030730)
PubChem (140459785)
PubChem (163046094)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight182493.8
Non-Polymers*Number of molecules2
Total formula weight796.9
All*Total formula weight183290.7
*Water molecules are not included.

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PDB entries from 2026-04-01

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