2VUZ
Crystal structure of Codakine in complex with biantennary nonasaccharide at 1.7A resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | CODAKINE | polymer | 129 | 14187.5 | 1 | UniProt (Q3KVL7) Pfam (PF00059) | CODAKIA ORBICULARIS | |
| 2 | B (B) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1317.2 | 1 | In PDB GlyTouCan (G39213VZ) | |||
| 3 | C (A) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
| 4 | D, E, F (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 5 | G (A) | water | water | 18.0 | 121 | Chemie (HOH) |
Sequence modifications
A: 1 - 129 (UniProt: Q3KVL7)
| PDB | External Database | Details |
|---|---|---|
| Lys 54 | Arg 73 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 14187.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 1317.2 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 316.4 | |
| All* | Total formula weight | 15821.0 |
