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2VC9

Family 89 Glycoside Hydrolase from Clostridium perfringens in complex with 2-acetamido-1,2-dideoxynojirmycin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
ALPHA-N-ACETYLGLUCOSAMINIDASEpolymer891102273.21UniProt (Q0TST1)
UniProt (by SIFTS) (A0A0H2YU91)
CLOSTRIDIUM PERFRINGENS
2B
(A)
2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCINnon-polymer204.21Chemie (NOK)
PubChem (122617)
PubChem (452004)
PubChem (46779888)
PubChem (3448884)
PubChem (70882343)
PubChem (71299564)
PubChem (71747145)
PubChem (92302456)
PubChem (11287174)
PubChem (14369132)
PubChem (14369133)
PubChem (118375182)
PubChem (118652150)
PubChem (126969162)
PubChem (129213115)
PubChem (129213116)
PubChem (138107268)
PubChem (173024811)
3C, D
(A)
GLYCEROLnon-polymer92.12Chemie (GOL)
PubChem (753)
4E
(A)
CALCIUM IONnon-polymer40.11Chemie (CA)
PubChem (271)
5F
(A)
waterwater18.0381Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight102273.2
Non-Polymers*Number of molecules4
Total formula weight428.5
All*Total formula weight102701.7
*Water molecules are not included.

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PDB entries from 2026-04-01

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