2R7Z
Cisplatin lesion containing RNA polymerase II elongation complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | T | 5'-D(*TP*AP*CP*TP*TP*GUP*CP*CP*CP*TP*CP*CP*TP*CP*AP*T)-3' | polymer | 17 | 5089.3 | 1 | |||
2 | N | 5'-D(*CP*AP*AP*GP*TP*AP*G)-3' | polymer | 7 | 2146.4 | 1 | |||
3 | P | 5'-R(*UP*UP*UP*GP*AP*GP*GP*AP*GP*G)-3' | polymer | 10 | 3258.0 | 1 | |||
4 | A | DNA-directed RNA polymerase II subunit RPB1 | polymer | 1733 | 191821.6 | 1 | UniProt (P04050) Pfam (PF04997) Pfam (PF05001) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit B1; RNA polymerase II subunit 1; DNA-directed RNA polymerase III largest subunit; B220 |
5 | B | DNA-directed RNA polymerase II subunit RPB2 | polymer | 1224 | 138937.3 | 1 | UniProt (P08518) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit 2; DNA-directed RNA polymerase II 140 kDa polypeptide; B150 |
6 | C | DNA-directed RNA polymerase II subunit RPB3 | polymer | 318 | 35330.5 | 1 | UniProt (P16370) Pfam (PF01193) Pfam (PF01000) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit B3; RNA polymerase II subunit 3; DNA-directed RNA polymerase II 45 kDa polypeptide; B44.5 |
7 | D | DNA-directed RNA polymerase II subunit RPB4 | polymer | 221 | 25451.2 | 1 | UniProt (P20433) Pfam (PF03874) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit B4; DNA-directed RNA polymerase II 32 kDa polypeptide; B32 |
8 | E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | polymer | 215 | 25117.1 | 1 | UniProt (P20434) Pfam (PF03871) Pfam (PF01191) In PDB | Saccharomyces cerevisiae (baker's yeast) | 'RNA |
9 | F | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | polymer | 155 | 17931.8 | 1 | UniProt (P20435) Pfam (PF01192) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerases I, II, and III subunit ABC2; DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide; ABC23 |
10 | G | DNA-directed RNA polymerase II subunit RPB7 | polymer | 171 | 19081.1 | 1 | UniProt (P34087) Pfam (PF03876) Pfam (PF00575) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit B7; B16 |
11 | H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 146 | 16525.4 | 1 | UniProt (P20436) Pfam (PF03870) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerases I, II, and III subunit ABC3; DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide; ABC14.4; ABC14.5 |
12 | I | DNA-directed RNA polymerase II subunit RPB9 | polymer | 122 | 14308.2 | 1 | UniProt (P27999) Pfam (PF02150) Pfam (PF01096) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit B9; DNA-directed RNA polymerase II subunit 9; DNA-directed RNA polymerase II 14.2 kDa polypeptide; B12.6 |
13 | J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | polymer | 70 | 8290.7 | 1 | UniProt (P22139) Pfam (PF01194) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerases I, II, and III subunit ABC5; DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; ABC10-beta; ABC8 |
14 | K | DNA-directed RNA polymerase II subunit RPB11 | polymer | 120 | 13633.5 | 1 | UniProt (P38902) Pfam (PF13656) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerase II subunit B11; DNA-directed RNA polymerase II 13.6 kDa polypeptide; B13.6 |
15 | L | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | polymer | 70 | 7730.0 | 1 | UniProt (P40422) Pfam (PF03604) In PDB | Saccharomyces cerevisiae (baker's yeast) | RNA polymerases I, II, and III subunit ABC4; ABC10-alpha |
16 | T | Cisplatin | non-polymer | 300.0 | 1 | Chemie (CPT) | |||
17 | A, B, C, I, J... | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
18 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 524651.9 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 847.6 | |
All* | Total formula weight | 525499.6 |