2OYM

Endo-glycoceramidase II from Rhodococcus sp.: five-membered iminocyclitol complex

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B	Endoglycoceramidase II	polymer	481	52122.5	2	UniProt (O33853) Pfam (PF00150) Pfam (PF18564) In PDB	Rhodococcus sp.
2	A, B	SODIUM ION	non-polymer		23.0	2	Chemie (NA)
3	A, B	N-{[(2R,3R,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PYRROLIDIN-2-YL]METHYL}-4-(DIMETHYLAMINO)BENZAMIDE	non-polymer		309.4	2	Chemie (MNI)
4		water	water		18.0	675	Chemie (HOH)

Sequence modifications

A, B: 31 - 490 (UniProt: O33853)

PDB	External Database	Details
Met 10	-	expression tag
Gly 11	-	expression tag
Ser 12	-	expression tag
Ser 13	-	expression tag
His 14	-	expression tag
His 15	-	expression tag
His 16	-	expression tag
His 17	-	expression tag
His 18	-	expression tag
His 19	-	expression tag
Ser 20	-	expression tag
Ser 21	-	expression tag
Gly 22	-	expression tag
Leu 23	-	expression tag
Val 24	-	expression tag
Pro 25	-	expression tag
Arg 26	-	expression tag
Gly 27	-	expression tag
Ser 28	-	expression tag
His 29	-	expression tag
Met 30	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	104245.1
Non-Polymers*	Number of molecules	4
	Total formula weight	664.7
All*	Total formula weight	104909.8

*Water molecules are not included.