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2NVU

Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ANEDD8-activating enzyme E1 regulatory subunitpolymer53660459.21UniProt (Q13564)
Pfam (PF00899)
In PDB
Homo sapiens (human)Amyloid protein-binding protein 1, Amyloid beta precursor protein-binding protein 1, 59 kDa, APP-BP1, Protooncogene protein 1, HPP1
2BMaltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimerapolymer80589332.81UniProt (Q8TBC4)
Pfam (PF00899)
Pfam (PF08825)
In PDB
Homo sapiens (human)MBP, Ubiquitin-activating enzyme 3, NEDD8-activating enzyme E1C, Ubiquitin-activating enzyme E1C
3CNEDD8-conjugating enzyme Ubc12polymer18020665.71UniProt (P61081)
Pfam (PF00179)
In PDB
Homo sapiens (human)Ubiquitin-conjugating enzyme E2 M, NEDD8 protein ligase, NEDD8 carrier protein
4I, JNEDD8polymer818919.32UniProt (Q15843)
Pfam (PF00240)
In PDB
Homo sapiens (human)Ubiquitin-like protein Nedd8, Neddylin
5BMAGNESIUM IONnon-polymer24.31Chemie (MG)
6BZINC IONnon-polymer65.41Chemie (ZN)
7BADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
8waterwater18.045Chemie (HOH)
Sequence modifications
A: 1 - 534 (UniProt: Q13564)
PDBExternal DatabaseDetails
Gly -1-cloning artifact
Ser 0-cloning artifact
B: 2012 - 2442 (UniProt: Q8TBC4)
PDBExternal DatabaseDetails
Met 998-SEE REMARK 999
Lys 999-SEE REMARK 999
Leu 1000-SEE REMARK 999
Met 1001-SEE REMARK 999
Ala 1371-SEE REMARK 999
C: 1 - 178 (UniProt: P61081)
PDBExternal DatabaseDetails
Gly -1-cloning artifact
Ser 0-cloning artifact
-Ser 16deletion
-Ala 17deletion
-Gly 18deletion
-Gly 19deletion
-Thr 20deletion
Ala 111Cys 111engineered mutation
I, J: 1 - 76 (UniProt: Q15843)
PDBExternal DatabaseDetails
Gly -4-cloning artifact
Ser -3-cloning artifact
Gly -2-cloning artifact
Gly -1-cloning artifact
Ser 0-cloning artifact
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight188296.2
Non-Polymers*Number of molecules3
Total formula weight596.9
All*Total formula weight188893.1
*Water molecules are not included.

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PDB entries from 2024-03-27

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