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2NVU

Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein activation complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2006-06-16
DetectorMARMOSAIC 300 mm CCD
Spacegroup nameP 32 2 1
Unit cell lengths156.494, 156.494, 190.485
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.000 - 2.800
R-factor0.241
Rwork0.241
R-free0.27400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB ENTRIES 1R4M 1y8x
RMSD bond length0.008
RMSD bond angle1.440
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareCNS
Data quality characteristics
 Overall
Low resolution limit [Å]50.000
High resolution limit [Å]2.800
Number of reflections65807
<I/σ(I)>25.7
Completeness [%]95.7
Redundancy7.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1729117% v/v PEG 3350, 0.1 M HEPES pH 7.0, 0.2 M Disodium tartrate, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 7.00

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