2GVK
Crystal structure of a dye-decolorizing peroxidase (DyP) from Bacteroides thetaiotaomicron VPI-5482 at 1.6 A resolution
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Heme peroxidase | polymer | 317 | 35636.2 | 1 | GenBank (29338526) Pfam (PF04261) Pfam (PF20628) UniProt (by SIFTS) (Q8A8E8) In PDB | Bacteroides thetaiotaomicron | |
2 | A | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
3 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
4 | A | UNKNOWN LIGAND | non-polymer | 1 | Chemie (UNL) | ||||
5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
6 | A | ACETIC ACID | non-polymer | 60.1 | 2 | Chemie (ACY) | |||
7 | water | water | 18.0 | 319 | Chemie (HOH) |
Sequence modifications
A: 1 - 316 (GenBank: 29338526)
PDB | External Database | Details |
---|---|---|
Gly 0 | - | expression tag |
Mse 1 | Met 1 | modified residue |
Mse 51 | Met 51 | modified residue |
Mse 55 | Met 55 | modified residue |
Mse 62 | Met 62 | modified residue |
Mse 68 | Met 68 | modified residue |
Mse 117 | Met 117 | modified residue |
Mse 147 | Met 147 | modified residue |
Mse 196 | Met 196 | modified residue |
Mse 248 | Met 248 | modified residue |
Mse 275 | Met 275 | modified residue |
Mse 279 | Met 279 | modified residue |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 35636.2 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 559.8 | |
All* | Total formula weight | 36196.0 |