2GVK
Crystal structure of a dye-decolorizing peroxidase (DyP) from Bacteroides thetaiotaomicron VPI-5482 at 1.6 A resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Heme peroxidase | polymer | 317 | 35636.2 | 1 | GenBank (29338526) Pfam (PF04261) Pfam (PF20628) UniProt (by SIFTS) (Q8A8E8) | Bacteroides thetaiotaomicron | |
| 2 | B, C, D (A) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 3 | E (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 4 | F (A) | UNKNOWN LIGAND | non-polymer | 1 | Chemie (UNL) | ||||
| 5 | G, H, I, J, K (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 6 | L, M (A) | ACETIC ACID | non-polymer | 60.1 | 2 | Chemie (ACY) | |||
| 7 | N (A) | water | water | 18.0 | 319 | Chemie (HOH) |
Sequence modifications
A: 1 - 316 (GenBank: 29338526)
| PDB | External Database | Details |
|---|---|---|
| Gly 0 | - | expression tag |
| Mse 1 | Met 1 | modified residue |
| Mse 51 | Met 51 | modified residue |
| Mse 55 | Met 55 | modified residue |
| Mse 62 | Met 62 | modified residue |
| Mse 68 | Met 68 | modified residue |
| Mse 117 | Met 117 | modified residue |
| Mse 147 | Met 147 | modified residue |
| Mse 196 | Met 196 | modified residue |
| Mse 248 | Met 248 | modified residue |
| Mse 275 | Met 275 | modified residue |
| Mse 279 | Met 279 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 35636.2 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 559.8 | |
| All* | Total formula weight | 36196.0 |
