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2GVK

Crystal structure of a dye-decolorizing peroxidase (DyP) from Bacteroides thetaiotaomicron VPI-5482 at 1.6 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0005829cellular_componentcytosol
A0020037molecular_functionheme binding
A0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 317
ChainResidue
APHE59
APRO60
AASP61

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 318
ChainResidue
ASER92
AARG273
AHOH446

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 319
ChainResidue
APHE79
APRO80
AASP81

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 320
ChainResidue
APRO35
AASP36
AASP81
AHOH371
AHOH438
AHOH481

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE UNL A 321
ChainResidue
AGLN20
AASN57
AARG145
ATYR146
AGLY149
ALYS150
AASP157
AASN247
APRO249
AHOH331

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 322
ChainResidue
ATHR104
APRO105
AVAL138
AVAL189
ATHR299
ATHR301
AHOH432
AHOH436

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 323
ChainResidue
AHIS231
AARG245
AASN247
APHE262
AMSE275
AMSE279
AACY327
AHOH530

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 324
ChainResidue
AALA72
AASP73
ATHR90
AGLY106
AHOH338
AHOH345

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 325
ChainResidue
AASP128
ALYS132
ASER254
ALYS255
AGLY256
AHOH359

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 326
ChainResidue
AHIS170
ALEU241
ASER267
AHOH420

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACY A 327
ChainResidue
AHIS194
AASN247
ALEU291
AEDO323
AHOH644

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACY A 328
ChainResidue
AASP148

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PDB entries from 2024-07-10

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