2GF9
Crystal structure of human RAB3D in complex with GDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Ras-related protein Rab-3D | polymer | 189 | 21673.4 | 1 | UniProt (O95716) Pfam (PF00071) | Homo sapiens (human) | |
| 2 | B (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 3 | C, D (A) | UNKNOWN ATOM OR ION | non-polymer | 2 | Chemie (UNX) | ||||
| 4 | E (A) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 5 | F (A) | water | water | 18.0 | 183 | Chemie (HOH) |
Sequence modifications
A: 20 - 189 (UniProt: O95716)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Gly 2 | - | cloning artifact |
| Ser 3 | - | cloning artifact |
| Ser 4 | - | cloning artifact |
| His 5 | - | expression tag |
| His 6 | - | expression tag |
| His 7 | - | expression tag |
| His 8 | - | expression tag |
| His 9 | - | expression tag |
| His 10 | - | expression tag |
| Ser 11 | - | cloning artifact |
| Ser 12 | - | cloning artifact |
| Gly 13 | - | cloning artifact |
| Leu 14 | - | cloning artifact |
| Val 15 | - | cloning artifact |
| Pro 16 | - | cloning artifact |
| Arg 17 | - | cloning artifact |
| Gly 18 | - | cloning artifact |
| Ser 19 | - | cloning artifact |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 21673.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 467.5 | |
| All* | Total formula weight | 22140.9 |
