2GF9
Crystal structure of human RAB3D in complex with GDP
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 201 |
| Chain | Residue |
| A | THR36 |
| A | GDP501 |
| A | HOH1017 |
| A | HOH1030 |
| A | HOH1054 |
| A | HOH1056 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE UNX A 301 |
| Chain | Residue |
| A | CYS184 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE UNX A 302 |
| Chain | Residue |
| A | PHE47 |
| A | THR86 |
| A | HOH1068 |
| A | HOH1109 |
| A | ARG17 |
| A | SER46 |
| site_id | AC4 |
| Number of Residues | 27 |
| Details | BINDING SITE FOR RESIDUE GDP A 501 |
| Chain | Residue |
| A | SER32 |
| A | VAL33 |
| A | GLY34 |
| A | LYS35 |
| A | THR36 |
| A | SER37 |
| A | PHE47 |
| A | ASN135 |
| A | LYS136 |
| A | ASP138 |
| A | LEU139 |
| A | GLU148 |
| A | SER165 |
| A | ALA166 |
| A | LYS167 |
| A | MG201 |
| A | HOH1005 |
| A | HOH1007 |
| A | HOH1012 |
| A | HOH1017 |
| A | HOH1035 |
| A | HOH1041 |
| A | HOH1047 |
| A | HOH1054 |
| A | HOH1055 |
| A | HOH1056 |
| A | HOH1065 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 9 |
| Details | Motif: {"description":"Switch 1","evidences":[{"source":"UniProtKB","id":"P63012","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | Motif: {"description":"Switch 2","evidences":[{"source":"UniProtKB","id":"P63012","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 14 |
| Details | Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human RAB3D in complex with GDP.","authoringGroup":["Structural genomics consortium (SGC)"]}},{"source":"PDB","id":"2GF9","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P20337","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphothreonine; by LRRK2","evidences":[{"source":"PubMed","id":"29125462","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| A | GLN81 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| A | SER32 |
