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2FCC

Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(C, E)
DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3')polymer133863.52
2B, D
(D, F)
DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3')polymer134218.12
3E, F
(A, B)
Endonuclease Vpolymer13715973.42UniProt (P04418)
Pfam (PF03013)
Enterobacteria phage T4
4G, H
(A)
SULFATE IONnon-polymer96.12Chemie (SO4)
5I, J
(A, B)
GLYCEROLnon-polymer92.12Chemie (GOL)
6K, L, M, N, O...
(C, D, E, F, A...)
waterwater18.0183Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight48109.9
Non-Polymers*Number of molecules4
Total formula weight376.3
All*Total formula weight48486.2
*Water molecules are not included.

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PDB entries from 2025-06-18

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