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2E59

Crystal structure of human MD-2 in complex with lipid IVa

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Lymphocyte antigen 96polymer14416586.11UniProt (Q9Y6Y9)
Pfam (PF02221)
Homo sapiens (human)MD-2 protein, ESOP-1
2B, C
(A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.22Chemie (NAG)
3D
(A)
(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATEnon-polymer711.91Chemie (LP5)
PubChem (257)
PubChem (44326364)
PubChem (21014146)
PubChem (70348483)
PubChem (3247032)
PubChem (123907)
PubChem (440499)
PubChem (10078514)
PubChem (130218880)
4E
(A)
2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-4-O-phosphono-beta-D-glucopyranosenon-polymer711.91Chemie (LP4)
PubChem (16214777)
PubChem (656420)
PubChem (101260031)
5F
(A)
waterwater18.089Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight16586.1
Non-Polymers*Number of molecules4
Total formula weight1866.1
All*Total formula weight18452.3
*Water molecules are not included.

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PDB entries from 2026-05-06

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