2BCG
Structure of doubly prenylated Ypt1:GDI complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (G) | Secretory pathway GDP dissociation inhibitor | polymer | 453 | 51466.4 | 1 | UniProt (P39958) Pfam (PF00996) | Saccharomyces cerevisiae (baker's yeast) | |
| 2 | B (Y) | GTP-binding protein YPT1 | polymer | 206 | 23286.3 | 1 | UniProt (P01123) Pfam (PF00071) | Saccharomyces cerevisiae (baker's yeast) | Protein YP2 |
| 3 | C, D (G) | GERAN-8-YL GERAN | non-polymer | 274.5 | 2 | Chemie (GER) | |||
| 4 | E (Y) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 5 | F (Y) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 6 | G (Y) | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) PubChem (3777159) | |||
| 7 | H, I (G, Y) | water | water | 18.0 | 923 | Chemie (HOH) |
Sequence modifications
G: 1 - 451 (UniProt: P39958)
Y: 1 - 206 (UniProt: P01123)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | cloning artifact |
| His 0 | - | cloning artifact |
| PDB | External Database | Details |
|---|---|---|
| Cys 204 | Gly 204 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 74752.7 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 1138.6 | |
| All* | Total formula weight | 75891.4 |
