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2BCG

Structure of doubly prenylated Ypt1:GDI complex

GO(遺伝子オントロジー)由来の情報
鎖名GO(遺伝子オントロジー)id名前空間内容
G0005092molecular_functionGDP-dissociation inhibitor activity
G0005093molecular_functionRab GDP-dissociation inhibitor activity
G0005096molecular_functionGTPase activator activity
G0005515molecular_functionprotein binding
G0005575cellular_componentcellular_component
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0007264biological_processsmall GTPase-mediated signal transduction
G0015031biological_processprotein transport
G0016192biological_processvesicle-mediated transport
Y0000045biological_processautophagosome assembly
Y0000139cellular_componentGolgi membrane
Y0000149molecular_functionSNARE binding
Y0000166molecular_functionnucleotide binding
Y0000407cellular_componentphagophore assembly site
Y0003924molecular_functionGTPase activity
Y0005515molecular_functionprotein binding
Y0005525molecular_functionGTP binding
Y0005737cellular_componentcytoplasm
Y0005739cellular_componentmitochondrion
Y0005783cellular_componentendoplasmic reticulum
Y0005789cellular_componentendoplasmic reticulum membrane
Y0005794cellular_componentGolgi apparatus
Y0005795cellular_componentGolgi stack
Y0005801cellular_componentcis-Golgi network
Y0005829cellular_componentcytosol
Y0006886biological_processintracellular protein transport
Y0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
Y0006890biological_processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
Y0006914biological_processautophagy
Y0012505cellular_componentendomembrane system
Y0015031biological_processprotein transport
Y0016020cellular_componentmembrane
Y0016192biological_processvesicle-mediated transport
Y0016236biological_processmacroautophagy
Y0031410cellular_componentcytoplasmic vesicle
Y0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
Y0032456biological_processendocytic recycling
Y0034045cellular_componentphagophore assembly site membrane
Y0034497biological_processprotein localization to phagophore assembly site
Y0034498biological_processearly endosome to Golgi transport
Y0035493biological_processSNARE complex assembly
Y0035494biological_processSNARE complex disassembly
Y0048194biological_processGolgi vesicle budding
Y0048211biological_processGolgi vesicle docking
Y0061709biological_processreticulophagy
Y0090114biological_processCOPII-coated vesicle budding
Y1900101biological_processregulation of endoplasmic reticulum unfolded protein response
Y1990261biological_processpre-mRNA catabolic process
PDBデータベースに由来する情報
site_idAC1
残基数6
詳細BINDING SITE FOR RESIDUE MG Y 1208
鎖名残基
YSER22
YGDP1207
YHOH3243
YHOH3244
YHOH3245
YHOH3246

site_idAC2
残基数27
詳細BINDING SITE FOR RESIDUE GDP Y 1207
鎖名残基
YLYS21
YSER22
YCYS23
YTYR33
YTHR34
YASP36
YTYR37
YASN121
YLYS122
YASP124
YLEU125
YSER151
YALA152
YLEU153
YMG1208
YHOH3002
YHOH3004
YHOH3024
YHOH3043
YHOH3054
YHOH3057
YHOH3243
YHOH3244
YHOH3246
YGLY18
YVAL19
YGLY20

site_idAC3
残基数7
詳細BINDING SITE FOR RESIDUE GER G 4000
鎖名残基
GPRO128
GALA134
GLYS145
GPHE192
GCYS221
GVAL224
GGER2000

site_idAC4
残基数8
詳細BINDING SITE FOR RESIDUE GER G 2000
鎖名残基
GALA134
GLYS145
GMET148
GLEU152
GILE155
GCYS221
GASP371
GGER4000

site_idAC5
残基数10
詳細BINDING SITE FOR RESIDUE TRS Y 3000
鎖名残基
GVAL435
GTHR436
GGLY437
GHOH4132
GHOH4259
GHOH4281
YASP141
YHOH3267
YHOH3269
YHOH3270

SwissProt/UniProtに記載されている蛋白質分子機能情報
site_idSWS_FT_FI1
残基数31
詳細Region: {"description":"Interaction with YPT1","evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"}]}
鎖名残基詳細

site_idSWS_FT_FI2
残基数23
詳細Region: {"description":"Interaction with GDI1","evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"}]}
鎖名残基詳細

site_idSWS_FT_FI3
残基数8
詳細Motif: {"description":"Effector region","evidences":[{"evidenceCode":"ECO:0000305"}]}
鎖名残基詳細

site_idSWS_FT_FI4
残基数17
詳細Binding site: {"evidences":[{"source":"PubMed","id":"14576435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16395334","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1UKV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YZN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BCG","evidenceCode":"ECO:0007744"}]}
鎖名残基詳細

site_idSWS_FT_FI5
残基数1
詳細Binding site: {"evidences":[{"source":"PubMed","id":"16034420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YZN","evidenceCode":"ECO:0007744"}]}
鎖名残基詳細

site_idSWS_FT_FI6
残基数1
詳細Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
鎖名残基詳細

site_idSWS_FT_FI7
残基数1
詳細Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
鎖名残基詳細

site_idSWS_FT_FI8
残基数2
詳細Lipidation: {"description":"S-palmitoyl cysteine","evidences":[{"evidenceCode":"ECO:0000255"}]}
鎖名残基詳細

site_idSWS_FT_FI9
残基数2
詳細Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}
鎖名残基詳細

CSAにおける酵素触媒機能の情報
site_idCSA1
残基数1
詳細Annotated By Reference To The Literature 1ksj
鎖名残基詳細
YGLN67

site_idCSA2
残基数1
詳細Annotated By Reference To The Literature 1ksj
鎖名残基詳細
YGLY18

239149

件を2025-07-23に公開中

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