2AKR
Structural basis of sulfatide presentation by mouse CD1d
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | T-cell surface glycoprotein CD1d1 | polymer | 285 | 32632.7 | 2 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (house mouse) | CD1.1 antigen |
2 | B, D | Beta-2-microglobulin | polymer | 99 | 11660.4 | 2 | GenBank (55153801) Pfam (PF07654) UniProt (by SIFTS) (P01887) In PDB | Mus musculus (house mouse) | |
3 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
5 | A, C | (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE | non-polymer | 890.3 | 2 | Chemie (CIS) | |||
6 | water | water | 18.0 | 748 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 285 (UniProt: P11609)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | SEE REMARK 999 |
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 88586.0 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 2886.6 | |
All* | Total formula weight | 91897.1 |