1YFJ
T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1, 2, 3, 4, 5... | 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | polymer | 15 | 4585.0 | 10 | |||
2 | A, B, C, D, E... | DNA adenine methylase | polymer | 259 | 30461.9 | 6 | UniProt (P04392) Pfam (PF02086) In PDB | Enterobacteria phage T4 | Deoxyadenosyl-methyltransferase, M.EcoT4Dam |
3 | 1, 2, 8 | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
4 | 2, 4 | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
5 | E, F, A, B, C... | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 6 | Chemie (SAH) | |||
6 | water | water | 18.0 | 343 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 259 (UniProt: P04392)
PDB | External Database | Details |
---|---|---|
Arg 139 | Gln 139 | SEE REMARK 999 |
Phe 140 | Tyr 140 | SEE REMARK 999 |
Leu 209 | Gln 209 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 228621.2 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 2528.4 | |
All* | Total formula weight | 231149.7 |