12DL
Native structure of the cytoplasmic lattice (CPL) asymmetric unit from mouse MII eggs
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (FA) | Tubulin beta-4B chain | polymer | 445 | 49877.8 | 1 | UniProt (P68372) Pfam (PF00091) Pfam (PF03953) | Mus musculus (house mouse) | Tubulin beta-2C chain |
| 2 | B, C (GB, GA) | NACHT, LRR and PYD domains-containing protein 5 | polymer | 1163 | 131468.5 | 2 | UniProt (Q9R1M5) Pfam (PF05729) Pfam (PF17779) Pfam (PF17776) Pfam (PF13516) | Mus musculus (house mouse) | Maternal antigen that embryos require,Mater protein,Ooplasm-specific protein 1,OP1 |
| 3 | D, GA (IA, JA) | Oocyte-expressed protein homolog | polymer | 164 | 18481.3 | 2 | UniProt (Q9CWE6) Pfam (PF16005) | Mus musculus (house mouse) | Factor located in oocytes permitting embryonic development,Floped,Oocyte- and embryo-specific protein 19,mOEP19,STAT3 downstream gene and differentiation regulator |
| 4 | E, F (HB, HA) | Transducin-like enhancer protein 6 | polymer | 581 | 65187.3 | 2 | UniProt (Q9WVB3) | Mus musculus (house mouse) | Groucho-related protein 6 |
| 5 | G (KA) | Zinc finger BED domain-containing protein 3 | polymer | 227 | 25512.2 | 1 | UniProt (Q9D0L1) | Mus musculus (house mouse) | Axin-interacting protein |
| 6 | H (LA) | KH domain-containing protein 3 | polymer | 440 | 48055.3 | 1 | UniProt (Q9CWU5) Pfam (PF16005) | Mus musculus (house mouse) | Protein Filia |
| 7 | I (MA) | NLR family, pyrin domain containing 4F | polymer | 937 | 108001.3 | 1 | UniProt (L7N1W9) Pfam (PF02758) Pfam (PF05729) Pfam (PF17779) Pfam (PF17776) Pfam (PF13516) | Mus musculus (house mouse) | |
| 8 | J, K, L, M, N... (AC, AD, AE, AF, AG...) | Inactive protein-arginine deiminase type-6 | polymer | 682 | 76854.1 | 10 | UniProt (Q8K3V4) Pfam (PF08526) Pfam (PF08527) Pfam (PF03068) | Mus musculus (house mouse) | Arginine deiminase-like protein,Egg and embryo abundant PAD,ePAD,P75,Peptidylarginine deiminase VI,Protein-arginine deiminase type VI,Protein-arginine deiminase type-6 |
| 9 | T (EA) | Tubulin alpha-1C chain | polymer | 449 | 49962.2 | 1 | UniProt (P68373) Pfam (PF00091) Pfam (PF03953) | Mus musculus (house mouse) | Alpha-tubulin 6,Alpha-tubulin isotype M-alpha-6,Tubulin alpha-6 chain |
| 10 | U, V (DA, DB) | NACHT, LRR and PYD domains-containing protein 14 | polymer | 993 | 113527.2 | 2 | UniProt (Q6B966) Pfam (PF17779) Pfam (PF17776) Pfam (PF13516) Pfam (PF05729) | Mus musculus (house mouse) | NALP-iota,Germ cell specific leucine-rich repeat NTPase |
| 11 | W, X (BA, BB) | E3 ubiquitin-protein ligase UHRF1 | polymer | 782 | 88436.8 | 2 | UniProt (Q8VDF2) Pfam (PF00240) Pfam (PF12148) Pfam (PF00628) Pfam (PF02182) | Mus musculus (house mouse) | Nuclear protein 95,Nuclear zinc finger protein Np95,Ubiquitin-like PHD and RING finger domain-containing protein 1,mUhrf1,Ubiquitin-like-containing PHD and RING finger domains protein 1 |
| 12 | Y, Z (CA, CB) | Ubiquitin-conjugating enzyme E2 D3 | polymer | 147 | 16706.1 | 2 | UniProt (P61079) Pfam (PF00179) | Mus musculus (house mouse) | (E3-independent) E2 ubiquitin-conjugating enzyme D3,E2 ubiquitin-conjugating enzyme D3,Ubiquitin carrier protein D3,Ubiquitin-conjugating enzyme E2(17)KB 3,Ubiquitin-conjugating enzyme E2-17 kDa 3,Ubiquitin-protein ligase D3 |
| 13 | AA (OA) | F-box and WD-40 domain protein 19 | polymer | 466 | 53657.5 | 1 | UniProt (Q8C2W8) Pfam (PF12937) | Mus musculus (house mouse) | |
| 14 | BA, CA, EA (QB, QA, QC) | S-phase kinase-associated protein 1 | polymer | 163 | 18694.0 | 3 | UniProt (Q9WTX5) Pfam (PF03931) Pfam (PF01466) | Mus musculus (house mouse) | Cyclin-A/CDK2-associated protein p19,S-phase kinase-associated protein 1A,p19A,p19skp1 |
| 15 | DA (NA) | Expressed sequence C85627 | polymer | 469 | 54205.7 | 1 | UniProt (Q3TSA9) Pfam (PF12937) | Mus musculus (house mouse) | F-box and WD-40 domain protein 18 |
| 16 | FA (PA) | F-box and WD-40 domain protein 21 | polymer | 468 | 54517.0 | 1 | UniProt (Q8BI38) Pfam (PF12937) | Mus musculus (house mouse) | |
| 17 | HA, LA (FA, EA) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 2 | Chemie (GTP) | |||
| 18 | IA, MA (FA, EA) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) PubChem (888) | |||
| 19 | JA, NA, OA, PA, QA... (KA, BA, BB) | ZINC ION | non-polymer | 65.4 | 11 | Chemie (ZN) PubChem (32051) | |||
| 20 | KA (EA) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) PubChem (271) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 33 |
| Total formula weight | 2136026.6 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 1854.5 | |
| All* | Total formula weight | 2137881.2 |
