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8RJ6
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BU of 8rj6 by Molmil
E. coli adenylate kinase in complex with ATP and AMP and Mg2+ as a result of enzymatic AP4A hydrolysis.
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8RJ4
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BU of 8rj4 by Molmil
E. coli adenylate kinase in complex with two ADP molecules and Mg2+ as a result of enzymatic AP4A hydrolysis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, CHLORIDE ION, ...
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8RJ9
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BU of 8rj9 by Molmil
E. coli adenylate kinase Asp84Ala variant in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
8Q2B
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BU of 8q2b by Molmil
E. coli Adenylate Kinase variant D158A (AK D158A) showing significant changes to the stacking of catalytic arginine side chains
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ...
Authors:Sauer, U.H, Wolf-Watz, M, Nam, K.
Deposit date:2023-08-01
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Elucidating Dynamics of Adenylate Kinase from Enzyme Opening to Ligand Release.
J.Chem.Inf.Model., 64, 2024
8CRG
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BU of 8crg by Molmil
E. coli adenylate kinase in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase
Authors:Oelker, M, Tischlik, S, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-03-08
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Insights into Enzymatic Catalysis from Binding and Hydrolysis of Diadenosine Tetraphosphate by E. coli Adenylate Kinase.
Biochemistry, 62, 2023
8BQF
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BU of 8bqf by Molmil
Adenylate Kinase L107I MUTANT
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Scheerer, D, Adkar, B.V, Bhattacharyya, S, Levy, D, Iljina, M, Iljina, I, Dym, O, Haran, G, Shakhnovich, E.I.
Deposit date:2022-11-21
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Allosteric communication between ligand binding domains modulates substrate inhibition in adenylate kinase.
Proc.Natl.Acad.Sci.USA, 120, 2023
7APU
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BU of 7apu by Molmil
Structure of Adenylate kinase from Escherichia coli in complex with two ADP molecules refined at 1.36 A resolution.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, SODIUM ION
Authors:Grundstom, C, Wolf-Watz, M, Nam, K, Sauer, U.H.
Deposit date:2020-10-19
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions.
Biochemistry, 60, 2021
6ZJD
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BU of 6zjd by Molmil
Crystal structure of human adenylate kinase 3, AK3, in complex with inhibitor ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, GTP:AMP phosphotransferase AK3, ...
Authors:Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2020-06-28
Release date:2020-09-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis for GTP versus ATP Selectivity in the NMP Kinase AK3.
Biochemistry, 59, 2020
6ZJB
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BU of 6zjb by Molmil
Crystal structure of human adenylate kinase 3, AK3, in complex with inhibitor Gp5A
Descriptor: GTP:AMP phosphotransferase AK3, mitochondrial, MAGNESIUM ION, ...
Authors:Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2020-06-28
Release date:2020-09-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.822 Å)
Cite:Structural Basis for GTP versus ATP Selectivity in the NMP Kinase AK3.
Biochemistry, 59, 2020
6ZJE
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BU of 6zje by Molmil
Crystal structure of human adenylate kinase 3, AK3, in complex with inhibitor Ap5A
Descriptor: BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CHLORIDE ION, GTP:AMP phosphotransferase AK3, ...
Authors:Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2020-06-28
Release date:2020-09-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural Basis for GTP versus ATP Selectivity in the NMP Kinase AK3.
Biochemistry, 59, 2020
6S36
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BU of 6s36 by Molmil
Crystal structure of E. coli Adenylate kinase R119K mutant
Descriptor: Adenylate kinase, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2019-06-24
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Nucleation of an Activating Conformational Change by a Cation-pi Interaction.
Biochemistry, 58, 2019
6RZE
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BU of 6rze by Molmil
Crystal structure of E. coli Adenylate kinase R119A mutant
Descriptor: Adenylate kinase, CHLORIDE ION, SODIUM ION
Authors:Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2019-06-13
Release date:2019-08-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Nucleation of an Activating Conformational Change by a Cation-pi Interaction.
Biochemistry, 58, 2019
6HAP
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BU of 6hap by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6HAM
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BU of 6ham by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6F7U
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BU of 6f7u by Molmil
Molecular Mechanism of ATP versus GTP Selectivity of Adenylate Kinase
Descriptor: Adenylate kinase, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
Authors:Rogne, P, Rosselin, M, Grundstrom, C, Hedberg, C, Wolf-Watz, M, Sauer, U.H.
Deposit date:2017-12-12
Release date:2018-03-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular mechanism of ATP versus GTP selectivity of adenylate kinase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5X6I
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BU of 5x6i by Molmil
Crystal structure of B. subtilis adenylate kinase variant
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ...
Authors:Moon, S, Bae, E.
Deposit date:2017-02-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability.
Struct Dyn., 6, 2019
5X6J
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BU of 5x6j by Molmil
Crystal structure of B. globisporus adenylate kinase variant
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION
Authors:Moon, S, Bae, E.
Deposit date:2017-02-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability.
Struct Dyn., 6, 2019
5EJE
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BU of 5eje by Molmil
Crystal structure of E. coli Adenylate kinase G56C/T163C double mutant in complex with Ap5a
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, COBALT (II) ION
Authors:Sauer, U.H, Kovermann, M, Grundstrom, C, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2015-11-01
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for ligand binding to an enzyme by a conformational selection pathway.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3X2S
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BU of 3x2s by Molmil
Crystal structure of pyrene-conjugated adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Fujii, A, Sekiguchi, Y, Matsumura, H, Inoue, T, Chung, W.-S, Hirota, S, Matsuo, T.
Deposit date:2014-12-31
Release date:2015-04-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Excimer Emission Properties on Pyrene-Labeled Protein Surface: Correlation between Emission Spectra, Ring Stacking Modes, and Flexibilities of Pyrene Probes.
Bioconjug.Chem., 26, 2015
4X8H
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BU of 4x8h by Molmil
Crystal structure of E. coli Adenylate kinase P177A mutant
Descriptor: Adenylate kinase
Authors:Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H.
Deposit date:2014-12-10
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for catalytically restrictive dynamics of a high-energy enzyme state.
Nat Commun, 6, 2015
4X8L
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BU of 4x8l by Molmil
Crystal structure of E. coli Adenylate kinase P177A mutant in complex with inhibitor Ap5a
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H.
Deposit date:2014-12-10
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for catalytically restrictive dynamics of a high-energy enzyme state.
Nat Commun, 6, 2015
4X8O
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BU of 4x8o by Molmil
Crystal structure of E. coli Adenylate kinase Y171W mutant in complex with inhibitor Ap5a
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H.
Deposit date:2014-12-10
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for catalytically restrictive dynamics of a high-energy enzyme state.
Nat Commun, 6, 2015
4X8M
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BU of 4x8m by Molmil
Crystal structure of E. coli Adenylate kinase Y171W mutant
Descriptor: Adenylate kinase
Authors:Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H.
Deposit date:2014-12-10
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for catalytically restrictive dynamics of a high-energy enzyme state.
Nat Commun, 6, 2015
4TYQ
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BU of 4tyq by Molmil
Crystal structure of an adenylate kinase mutant--AKm2
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ...
Authors:Moon, S, Bae, E.
Deposit date:2014-07-09
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of thermally stable adenylate kinase mutants designed by local structural entropy optimization and structure-guided mutagenesis
J KOREAN SOC APPL BIOL CHEM, 57, 2014
4TYP
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BU of 4typ by Molmil
Crystal structure of an adenylate kinase mutant--AKm1
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION
Authors:Moon, S, Bae, E.
Deposit date:2014-07-09
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of thermally stable adenylate kinase mutants designed by local structural entropy optimization and structure-guided mutagenesis
J KOREAN SOC APPL BIOL CHEM, 57, 2014

 

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