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3VMK
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BU of 3vmk by Molmil
3-isopropylmalate dehydrogenase from Shewanella benthica DB21 MT-2
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CHLORIDE ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-12-13
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural analysis of 3-isopropylmalate dehydrogenase from the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1
Acta Crystallogr.,Sect.F, 68, 2012
5I95
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BU of 5i95 by Molmil
Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase R140Q Mutant Homodimer bound to NADPH and alpha-Ketoglutaric acid
Descriptor: 2-OXOGLUTARIC ACID, ACETATE ION, CALCIUM ION, ...
Authors:Zhang, B, Jin, L, Wu, W, Jiang, F, DeLaBarre, B, Travins, J.A, Padyana, A.K.
Deposit date:2016-02-19
Release date:2017-03-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:AG-221, a First-in-Class Therapy Targeting Acute Myeloid Leukemia Harboring Oncogenic IDH2 Mutations.
Cancer Discov, 7, 2017
5I96
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BU of 5i96 by Molmil
Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with AG-221 (Enasidenib) Inhibitor.
Descriptor: 2-methyl-1-[(4-[6-(trifluoromethyl)pyridin-2-yl]-6-{[2-(trifluoromethyl)pyridin-4-yl]amino}-1,3,5-triazin-2-yl)amino]propan-2-ol, ACETATE ION, CALCIUM ION, ...
Authors:Wei, W, Zhang, B, Jin, L, Jiang, F, DeLaBarre, B, Travins, J.A, Padyana, A.K.
Deposit date:2016-02-19
Release date:2017-03-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:AG-221, a First-in-Class Therapy Targeting Acute Myeloid Leukemia Harboring Oncogenic IDH2 Mutations.
Cancer Discov, 7, 2017
3WZY
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BU of 3wzy by Molmil
S266A mutant 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580MPa - complex with IPM and Mg
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Nagae, T, Watanabe, N.
Deposit date:2014-10-08
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
To be Published
4JA8
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BU of 4ja8 by Molmil
Complex of Mitochondrial Isocitrate Dehydrogenase R140Q Mutant with AGI-6780 Inhibitor
Descriptor: 1-[5-(cyclopropylsulfamoyl)-2-thiophen-3-yl-phenyl]-3-[3-(trifluoromethyl)phenyl]urea, CALCIUM ION, GLYCEROL, ...
Authors:Wei, W, Chen, L, Wu, M, Jiang, F, Travins, J, Qian, K, DeLaBarre, B.
Deposit date:2013-02-18
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Targeted inhibition of mutant IDH2 in leukemia cells induces cellular differentiation.
Science, 340, 2013
1HQS
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BU of 1hqs by Molmil
CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE FROM BACILLUS SUBTILIS
Descriptor: CITRIC ACID, ISOCITRATE DEHYDROGENASE, R-1,2-PROPANEDIOL, ...
Authors:Singh, S.K, Matsuno, K, LaPorte, D.C, Banaszak, L.J.
Deposit date:2000-12-19
Release date:2001-07-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of Bacillus subtilis isocitrate dehydrogenase at 1.55 A. Insights into the nature of substrate specificity exhibited by Escherichia coli isocitrate dehydrogenase kinase/phosphatase.
J.Biol.Chem., 276, 2001
3TY4
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BU of 3ty4 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe
Descriptor: GLYCEROL, Probable homoisocitrate dehydrogenase
Authors:Bulfer, S.L, Hendershot, J.M, Trievel, R.C.
Deposit date:2011-09-23
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe.
Proteins, 80, 2012
3VMJ
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BU of 3vmj by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CHLORIDE ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-12-13
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural analysis of 3-isopropylmalate dehydrogenase from the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1
Acta Crystallogr.,Sect.F, 68, 2012
3VML
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BU of 3vml by Molmil
Chimera 3-isopropylmalate dehydrogenase between Shewanella oneidensis MR-1 (O) and Shewanella benthica DB21 MT-2 (M) from N-terminal: 20% O middle 70% M residual 10% O
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CHLORIDE ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-12-13
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure analysis of chimeric 3-isopropylmalate dehydrogenase between the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1
To be Published
6LTF
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BU of 6ltf by Molmil
Dimeric isocitrate dehydrogenase from Xanthomonas campestris pv. campestris 8004
Descriptor: BENZOIC ACID, Isocitrate dehydrogenase
Authors:Zhu, G.P.
Deposit date:2020-01-22
Release date:2021-02-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Dimeric isocitrate dehydrogenase from Xanthomonas campestris pv. campestris 8004
To Be Published
3DMS
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BU of 3dms by Molmil
1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei
Descriptor: Isocitrate dehydrogenase [NADP]
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2008-07-01
Release date:2008-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of the substrate specificity of bifunctional isocitrate dehydrogenase kinase/phosphatase.
Biochemistry, 50, 2011
1W0D
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BU of 1w0d by Molmil
The high resolution structure of Mycobacterium tuberculosis LeuB (Rv2995c)
Descriptor: 3-ISOPROPYLMALATE DEHYDROGENASE, SULFATE ION
Authors:Singh, R.K, Kefala, G, Janowski, R, Mueller-Dieckmann, C, Weiss, M.S, TB Structural Genomics Consortium (TBSGC)
Deposit date:2004-06-03
Release date:2004-12-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The High Resolution Structure of Leub (Rv2995C) from Mycobacterium Tuberculosis
J.Mol.Biol., 346, 2005
6BKX
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BU of 6bkx by Molmil
Novel Modes of Inhibition of Wild-Type IDH1: Direct Covalent Modification of His315 with Cmpd1
Descriptor: (6aS,7S,9R,10aS)-7,10a-dimethyl-8-oxo-2-(phenylamino)-5,6,6a,7,8,9,10,10a-octahydrobenzo[h]quinazoline-9-carbonitrile, CALCIUM ION, ISOCITRIC ACID, ...
Authors:Jakob, C.G, Qiu, W.
Deposit date:2017-11-09
Release date:2018-07-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Novel Modes of Inhibition of Wild-Type Isocitrate Dehydrogenase 1 (IDH1): Direct Covalent Modification of His315.
J. Med. Chem., 61, 2018
5HN3
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BU of 5hn3 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis (apo form)
Descriptor: Homoisocitrate dehydrogenase, IMIDAZOLE, SODIUM ION
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
1PB1
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BU of 1pb1 by Molmil
A four location model to explain the stereospecificity of proteins.
Descriptor: GLYCEROL, ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], ...
Authors:Mesecar, A.D, Koshland Jr, D.E.
Deposit date:2003-05-14
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Biology: A New Model for Protein Stereospecificity.
Nature, 403, 2000
1PB3
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BU of 1pb3 by Molmil
Sites of binding and orientation in a four location model for protein stereospecificity.
Descriptor: GLYCEROL, Isocitrate dehydrogenase [NADP], SULFATE ION
Authors:Mesecar, A.D, Koshland Jr, D.E.
Deposit date:2003-05-14
Release date:2003-06-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Sites of Binding and Orientation in a Four-Location Model for Protein Stereospecificity.
IUBMB Life, 49, 2000
4XXV
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BU of 4xxv by Molmil
Crystal structure of 3-isopropylmalate dehydrogenase from Burkholderia thailandensis in complex with NAD
Descriptor: 3-isopropylmalate dehydrogenase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2015-01-31
Release date:2015-02-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of 3-isopropylmalate dehydrogenase from Burkholderia thailandensis in complex with NAD
to be published
6C0E
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BU of 6c0e by Molmil
Crystal Structure of Isocitrate Dehydrogenase from Legionella pneumophila with bound NADPH with an alpha-ketoglutarate adduct
Descriptor: (3~{S})-3-[(4~{S})-3-aminocarbonyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-4~{H}-pyridin-4-yl]-2-oxidanylidene-pentanedioic acid, CHLORIDE ION, GLYCINE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-12-29
Release date:2018-02-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Isocitrate Dehydrogenase from Legionella pneumophila with bound NADPH with an ??-ketoglutarate adduct
to be published
8KIB
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BU of 8kib by Molmil
NADP+-dependent cytosolic isocitrate dehydrogenase complexed with oxaloacetate
Descriptor: ISOPROPYL ALCOHOL, Isocitrate dehydrogenase [NADP] cytoplasmic, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Kang, B.S, Cho, H.Y.
Deposit date:2023-08-23
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NADP+-dependent cytosolic isocitrate dehydrogenase complexed with oxaloacetate
To Be Published
6IXL
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BU of 6ixl by Molmil
Crystal structure of isocitrate dehydrogenase from Ostreococcus tauri
Descriptor: GLYCEROL, Isocitrate dehydrogenase, SULFATE ION
Authors:Zhu, G.P, Tang, W.G, Wang, P.
Deposit date:2018-12-11
Release date:2019-12-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of NAD + -linked isocitrate dehydrogenase from the green alga Ostreococcus tauri and its evolutionary relationship with eukaryotic NADP + -linked homologs.
Arch.Biochem.Biophys., 708, 2021
2UXQ
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BU of 2uxq by Molmil
Isocitrate dehydrogenase from the psychrophilic bacterium Desulfotalea psychrophila: biochemical properties and crystal structure analysis
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, ISOCITRATE DEHYDROGENASE NATIVE, ...
Authors:Fedoy, A.-E, Yang, N, Martinez, A, Leiros, H.-K.S, Steen, I.H.
Deposit date:2007-03-29
Release date:2008-02-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and Functional Properties of Isocitrate Dehydrogenase from the Psychrophilic Bacterium Desulfotalea Psychrophila Reveal a Cold -Active Enzyme with an Unusual High Thermal
J.Mol.Biol., 372, 2007
4IWH
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BU of 4iwh by Molmil
Crystal structure of a 3-isopropylmalate dehydrogenase from Burkholderia pseudomallei
Descriptor: 3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-01-23
Release date:2013-02-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a 3-isopropylmalate dehydrogenase from Burkholderia pseudomallei
TO BE PUBLISHED
1CNZ
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BU of 1cnz by Molmil
3-ISOPROPYLMALATE DEHYDROGENASE (IPMDH) FROM SALMONELLA TYPHIMURIUM
Descriptor: MANGANESE (II) ION, PROTEIN (3-ISOPROPYLMALATE DEHYDROGENASE), SULFATE ION
Authors:Wallon, G, Kryger, G, Lovett, S.T, Oshima, T, Ringe, D, Petsko, G.A.
Deposit date:1999-05-24
Release date:1999-06-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal Structures of Eschericia Coli and Salmonella Typhimurium 3- Isopropylmalate Dehydrogenase and Comparison with Their Thermophilic Counterpart from Thermus Thermophilus
J.Mol.Biol., 266, 1997
8W49
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BU of 8w49 by Molmil
mouse isocitrate dehydrogenase with isocitrate and magnesium
Descriptor: ISOCITRIC ACID, ISOPROPYL ALCOHOL, Isocitrate dehydrogenase [NADP] cytoplasmic, ...
Authors:Kang, B.S, Cho, H.Y.
Deposit date:2023-08-23
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:mouse isocitrate dehydrogenase with isocitrate and magnesium
To Be Published
6IXT
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BU of 6ixt by Molmil
Crystal structure of isocitrate dehydrogenase from Ostreococcus tauri in complex with NAD+ and Mg2+
Descriptor: GLYCEROL, Isocitrate dehydrogenase, MAGNESIUM ION, ...
Authors:Zhu, G.P, Tang, W.G, Wang, P.
Deposit date:2018-12-12
Release date:2019-12-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structures of NAD + -linked isocitrate dehydrogenase from the green alga Ostreococcus tauri and its evolutionary relationship with eukaryotic NADP + -linked homologs.
Arch.Biochem.Biophys., 708, 2021

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