PDB: 30436 resultsInfo pagesStatus searchChemie searchBIRD

---

2C4Y	MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3', Capsid protein Authors: Grahn, E, Moss, T, Helgstrand, C, Fridborg, K, Sundaram, M, Tars, K, Lago, H, Stonehouse, N.J, Davis, D.R, Stockley, P.G, Liljas, L. Deposit date: 2005-10-25 Release date: 2006-01-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex. Rna, 7, 2001
2C4Q	MS2-RNA HAIRPIN (2ONE -5) COMPLEX Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3', COAT PROTEIN Authors: Grahn, E, Moss, T, Helgstrand, C, Fridborg, K, Sundaram, M, Tars, K, Lago, H, Stonehouse, N.J, Davis, D.R, Stockley, P.G, Liljas, L. Deposit date: 2005-10-21 Release date: 2005-11-07 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex. Rna, 7, 2001
2BU1	MS2-RNA HAIRPIN (5BRU -5) COMPLEX Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3', MS2 COAT PROTEIN Authors: Grahn, E, Moss, T, Helgstrand, C, Fridborg, K, Sundaram, M, Tars, K, Lago, H, Stonehouse, N.J, Davis, D.R, Stockley, P.G, Liljas, L. Deposit date: 2005-06-08 Release date: 2005-08-18 Last modified: 2019-10-09 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex. Rna, 7, 2001
7LYJ	SARS-CoV-2 frameshifting pseudoknot RNA Descriptor: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Jones, C.P, Ferre-D'Amare, A.R. Deposit date: 2021-03-07 Release date: 2021-05-26 Last modified: 2022-02-02 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot. Rna, 28, 2022
2C4Z	MS2-RNA HAIRPIN (2SU -5-6) COMPLEX Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3', COAT PROTEIN Authors: Grahn, E, Moss, T, Helgstrand, C, Fridborg, K, Sundaram, M, Tars, K, Lago, H, Stonehouse, N.J, Davis, D.R, Stockley, P.G, Liljas, L. Deposit date: 2005-10-25 Release date: 2006-01-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex. Rna, 7, 2001
2C50	MS2-RNA HAIRPIN (A -5) COMPLEX Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3', COAT PROTEIN Authors: Grahn, E, Moss, T, Helgstrand, C, Fridborg, K, Sundaram, M, Tars, K, Lago, H, Stonehouse, N.J, Davis, D.R, Stockley, P.G, Liljas, L. Deposit date: 2005-10-25 Release date: 2006-01-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex. Rna, 7, 2001
2C51	MS2-RNA HAIRPIN (G -5) COMPLEX Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3', COAT PROTEIN Authors: Grahn, E, Moss, T, Helgstrand, C, Fridborg, K, Sundaram, M, Tars, K, Lago, H, Stonehouse, N.J, Davis, D.R, Stockley, P.G, Liljas, L. Deposit date: 2005-10-25 Release date: 2006-01-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex. Rna, 7, 2001
1NZ1	Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80 Descriptor: SP U6 Intramolecular Stem-Loop RNA Authors: Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E. Deposit date: 2003-02-14 Release date: 2003-05-13 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification. RNA, 9, 2003
1MJI	DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX Descriptor: 50S ribosomal protein L5, 5S rRNA fragment, MAGNESIUM ION, ... Authors: Perederina, A, Nevskaya, N, Nikonov, O, Nikulin, A, Dumas, P, Yao, M, Tanaka, I, Garber, M, Gongadze, G, Nikonov, S. Deposit date: 2002-08-28 Release date: 2003-01-21 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex RNA, 8, 2002
5YDU	Crystal structure of Utp30 Descriptor: PHOSPHATE ION, Ribosome biogenesis protein UTP30 Authors: Hu, J, Zhu, X, Ye, K. Deposit date: 2017-09-14 Release date: 2017-11-01 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.646 Å) Cite: Structure and RNA recognition of ribosome assembly factor Utp30. RNA, 23, 2017
1Z31	The structure of an enzyme-activating fragment of human telomerase RNA Descriptor: human telomerase PJ6 hairpin Authors: Leeper, T.C, Varani, G. Deposit date: 2005-03-10 Release date: 2005-03-22 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: The structure of an enzyme-activating fragment of human telomerase RNA. RNA, 11, 2005
2ZY6	Crystal structure of a truncated tRNA, TPHE39A Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... Authors: Tanaka, I, Yao, M, Tanaka, Y, Kitago, Y, Ymagata, S. Deposit date: 2009-01-14 Release date: 2009-06-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand Rna, 15, 2009
3CDI	Crystal structure of E. coli PNPase Descriptor: Polynucleotide phosphorylase Authors: Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S. Deposit date: 2008-02-27 Release date: 2008-12-09 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. Rna, 14, 2008
1IK5	Crystal Structure of a 14mer RNA Containing Double UU Bulges in Two Crystal Forms: A Novel U*(AU) Intramolecular Base Triple Descriptor: 5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3', 5'-R(*GP*GP*UP*AP*UP*UP*UP*UP*GP*GP*UP*AP*(CBR)P*C)-3', MAGNESIUM ION Authors: Deng, J, Xiong, Y, Sudarsanakumar, C, Shi, K, Sundaralingam, M. Deposit date: 2001-05-02 Release date: 2001-11-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple. RNA, 7, 2001
3DW7	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified Descriptor: Sarcin/Ricin Domain from E. Coli 23 S rRNA Authors: Olieric, V, Rieder, U, Lang, K, Serganov, A, Schulze-Briese, C, Micura, R, Dumas, P, Ennifar, E. Deposit date: 2008-07-21 Release date: 2009-03-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1 Å) Cite: A fast selenium derivatization strategy for crystallization and phasing of RNA structures. Rna, 15, 2009
3DW5	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified Descriptor: Sarcin/Ricin Domain from E. Coli 23 S rRNA Authors: Olieric, V, Rieder, U, Lang, K, Serganov, A, Schulze-Briese, C, Micura, R, Dumas, P, Ennifar, E. Deposit date: 2008-07-21 Release date: 2009-03-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (0.96 Å) Cite: A fast selenium derivatization strategy for crystallization and phasing of RNA structures. Rna, 15, 2009
3DW6	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified Descriptor: GLYCEROL, Sarcin/Ricin Domain from E. Coli 23 S rRNA Authors: Olieric, V, Rieder, U, Lang, K, Serganov, A, Schulze-Briese, C, Micura, R, Dumas, P, Ennifar, E. Deposit date: 2008-07-21 Release date: 2009-03-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1 Å) Cite: A fast selenium derivatization strategy for crystallization and phasing of RNA structures. Rna, 15, 2009
3DW4	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified Descriptor: GLYCEROL, Sarcin/Ricin Domain from E. Coli 23 S rRNA Authors: Olieric, V, Rieder, U, Lang, K, Serganov, A, Schulze-Briese, C, Micura, R, Dumas, P, Ennifar, E. Deposit date: 2008-07-21 Release date: 2009-03-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (0.97 Å) Cite: A fast selenium derivatization strategy for crystallization and phasing of RNA structures. Rna, 15, 2009
3DVZ	Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA Descriptor: GLYCEROL, Sarcin/Ricin Domain from E. Coli 23 S rRNA Authors: Olieric, V, Rieder, U, Lang, K, Serganov, A, Schulze-Briese, C, Micura, R, Dumas, P, Ennifar, E. Deposit date: 2008-07-21 Release date: 2009-03-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1 Å) Cite: A fast selenium derivatization strategy for crystallization and phasing of RNA structures. Rna, 15, 2009
2PY9	Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2 Descriptor: 12-mer C-rich strand of human telomeric RNA, Poly(rC)-binding protein 2 Authors: James, T.L, Du, Z, Lee, J.K. Deposit date: 2007-05-15 Release date: 2007-06-12 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.56 Å) Cite: X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2. Rna, 13, 2007
259D	RNA HYDRATION: A DETAILED LOOK Descriptor: RNA (5'-R(*CP*CP*CP*CP*GP*GP*GP*G)-3') Authors: Egli, M, Portmann, S, Usman, N. Deposit date: 1996-05-03 Release date: 1996-08-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.46 Å) Cite: RNA hydration: a detailed look. Biochemistry, 35, 1996
3CDJ	Crystal structure of the E. coli KH/S1 domain truncated PNPase Descriptor: Polynucleotide phosphorylase Authors: Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S. Deposit date: 2008-02-27 Release date: 2008-12-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. Rna, 14, 2008
7MKY	SARS-CoV-2 frameshifting pseudoknot RNA Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COBALT HEXAMMINE(III), MAGNESIUM ION, ... Authors: Jones, C.P, Ferre-D'Amare, A.R. Deposit date: 2021-04-27 Release date: 2021-05-26 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.31 Å) Cite: Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot. Rna, 28, 2022
2FYH	Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus Descriptor: putative integral membrane transport protein Authors: Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-02-08 Release date: 2007-02-20 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus Rna, 15, 2009
2N0R	RNA structure determination by solid-state NMR spectroscopy Descriptor: RNA (5'-R(*GP*CP*UP*GP*AP*GP*CP*UP*CP*GP*AP*AP*AP*GP*AP*GP*CP*AP*AP*UP*GP*AP*UP*GP*UP*C)-3') Authors: Marchanka, A, Simon, B, Althoff-Ospelt, G, Carlomagno, T. Deposit date: 2015-03-12 Release date: 2015-05-20 Last modified: 2023-06-14 Method: SOLID-STATE NMR Cite: RNA structure determination by solid-state NMR spectroscopy. Nat Commun, 6, 2015

<12345678910111213141516>