PDB: 30436 resultsInfo pagesStatus searchChemie searchBIRD

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8DCA	RNA ligase RtcB from Pyrococcus horikoshii in complex with Co2+ and GTP Descriptor: COBALT (II) ION, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Jacewicz, A, Dantuluri, S, Shuman, S. Deposit date: 2022-06-16 Release date: 2022-10-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna, 28, 2022
2RLU	The Three Dimensional Structure of the Moorella thermoacetica Selenocysteine Insertion Sequence RNA Hairpin and its Interaction with the Elongation factor SelB Descriptor: RNA (5'-R(*GP*GP*UP*UP*GP*CP*GP*GP*GP*UP*CP*UP*CP*GP*CP*AP*AP*CP*C)-3') Authors: Beribisky, A.V, Tavares, T.J, Amborski, A.N, Motamed, M, Johnson, A.E, Mark, T.L, Johnson, P.E. Deposit date: 2007-08-21 Release date: 2008-02-26 Last modified: 2020-09-09 Method: SOLUTION NMR Cite: The three-dimensional structure of the Moorella thermoacetica selenocysteine insertion sequence RNA hairpin and its interaction with the elongation factor SelB Rna, 13, 2007
2TPK	AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS Descriptor: RNA (MRNA PSEUDOKNOT) Authors: Holland, J.A, Hansen, M.R, Du, Z, Hoffman, D.W. Deposit date: 1998-10-28 Release date: 1998-11-04 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2. Rna, 5, 1999
2F3J	The solution structure of the REF2-I mRNA export factor (residues 1-155). Descriptor: RNA and export factor binding protein 2 Authors: Golovanov, A.P, Hautbergue, G.M, Wilson, S.A, Lian, L.Y. Deposit date: 2005-11-21 Release date: 2006-10-31 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: The solution structure of REF2-I reveals interdomain interactions and regions involved in binding mRNA export factors and RNA. Rna, 12, 2006
8AMK	Crystal structure of AUGUGGCAU duplex crystallized in the presence of calcium ions Descriptor: RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
8AMN	Crystal structure of AUGUGGCAU duplex with strontium ions Descriptor: RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3'), STRONTIUM ION Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
4XBF	Structure of LSD1:CoREST in complex with ssRNA Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Lysine-specific histone demethylase 1A, ... Authors: Luka, Z, Loukachevitch, L.V, Martin, W.J, Wagner, C, Reiter, N.J. Deposit date: 2014-12-16 Release date: 2016-04-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.803 Å) Cite: G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme. RNA, 22, 2016
7PMM	DEAD-box helicase DbpA in the active conformation bound to a ss/dsRNA junction and ADP/BeF3 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... Authors: Wurm, J.P. Deposit date: 2021-09-02 Release date: 2022-09-14 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
1F6X	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-23 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F6Z	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-24 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F78	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-26 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F79	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-23 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7H	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7F	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURES Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7I	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7G	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURES Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
2XC7	Solution Structure of PHAX-RBD in complex with ssRNA Descriptor: 5'-(AP*UP*CP*GP)-3', PHOSPHORYLATED ADAPTER RNA EXPORT PROTEIN Authors: Mourao, A, Mackereth, C.D, Varrot, A, Cusack, S, Sattler, M. Deposit date: 2010-04-18 Release date: 2010-04-28 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Structure and RNA Recognition by the Snrna and Snorna Transport Factor Phax. RNA, 16, 2010
2W4S	novel RNA-binding domain in Cryptosporidium parvum at 2.5 angstrom resolution Descriptor: ANKYRIN-REPEAT PROTEIN Authors: Varrot, A, Mackereth, C, Mourao, A, Sattler, M, Cusack, S. Deposit date: 2008-12-02 Release date: 2009-12-29 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structure and RNA Recognition by the Snrna and Snorna Transport Factor Phax. RNA, 16, 2010
7JJU	Crystal structure of en exoribonuclease-resistant RNA (xrRNA) from Potato leafroll virus (PLRV) Descriptor: CACODYLATE ION, Guanidinium, IRIDIUM HEXAMMINE ION, ... Authors: Steckelberg, A.-L, Vicens, Q, Auffinger, P, Costantino, D.C, Nix, J.C, Kieft, J.S. Deposit date: 2020-07-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.604 Å) Cite: The crystal structure of a Polerovirus exoribonuclease-resistant RNA shows how diverse sequences are integrated into a conserved fold. Rna, 26, 2020
2Y95	Solution structure of AUCG tetraloop hairpin found in human Xist RNA A-repeats essential for X-inactivation Descriptor: 5'-R(*GP*GP*CP*GP*CP*AP*UP*CP*GP*GP*CP*GP*CP*C)-3' Authors: Duszczyk, M.M, Sattler, M. Deposit date: 2011-02-11 Release date: 2011-10-26 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: The Xist RNA A-Repeat Comprises a Novel Aucg Tetraloop Fold and a Platform for Multimerization. RNA, 17, 2011
8FTO	E. coli 70S ribosome with an improved MS2 tag inserted in H98 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Nissley, A.J, Cate, J.H.D. Deposit date: 2023-01-12 Release date: 2023-08-02 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.85 Å) Cite: Interactions between terminal ribosomal RNA helices stabilize the E. coli large ribosomal subunit. Rna, 29, 2023
6LLB	Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, in complex with 6 nt RNA Descriptor: MPY-RNase J, RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), SULFATE ION, ... Authors: Li, D.F, Hou, Y.J, Guo, L. Deposit date: 2019-12-22 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A newly identified duplex RNA unwinding activity of archaeal RNase J depends on processive exoribonucleolysis coupled steric occlusion by its structural archaeal loops. Rna Biol., 17, 2020
4NL3	Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA Descriptor: 5'-R(*UP*UP*UP*UP*UP*U)-3', Protein hfq Authors: Kovach, A.R, Brennan, R.G. Deposit date: 2013-11-13 Release date: 2014-09-10 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes. Rna, 20, 2014
6HCT	Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*G)-3'), RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*GP*CP*AP*UP*GP*AP*AP*GP*C)-3'), ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-08-16 Release date: 2018-10-31 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.091 Å) Cite: The role of RNA structure in translational regulation by L7Ae protein in archaea. RNA, 25, 2019
5YDT	Remodeled Utp30 in 90S pre-ribosome (Mtr4-depleted, Enp1-TAP) Descriptor: 5' ETS RNA, Ribosome biogenesis protein UTP30, Saccharomyces cerevisiae strain ALI 308 18S ribosomal RNA gene, ... Authors: Ye, K, Zhu, X, Hu, J. Deposit date: 2017-09-14 Release date: 2017-11-01 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure and RNA recognition of ribosome assembly factor Utp30. RNA, 23, 2017

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