Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7Y02
DownloadVisualize
BU of 7y02 by Molmil
Crystal structure of Ricin A chain bound with (S)-2-(2-amino-4-oxo-3,4-dihydropteridine-7-carboxamido)-3-(4-fluorophenyl)propanoic acid
Descriptor: (2S)-2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]-3-(4-fluorophenyl)propanoic acid, Ricin A chain, SULFATE ION
Authors:Goto, M, Higashi, S, Ohba, T, Kawata, R, Nagatsu, K, Suzuki, S, Saito, R.
Deposit date:2022-06-03
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket.
Biochem.Biophys.Res.Commun., 627, 2022
7Y05
DownloadVisualize
BU of 7y05 by Molmil
Crystal structure of Ricin A chain bound with (R)-2-(2-amino-4-oxo-3,4-dihydropteridine-7-carboxamido)-2-phenylacetic acid
Descriptor: (2R)-2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]-2-phenyl-ethanoic acid, Ricin A chain, SULFATE ION
Authors:Goto, M, Higashi, S, Ohba, T, Kawata, R, Nagatsu, K, Suzuki, S, Saito, R.
Deposit date:2022-06-03
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Conformational change in ricin toxin A-Chain: A critical factor for inhibitor binding to the secondary pocket.
Biochem.Biophys.Res.Commun., 627, 2022
7D6R
DownloadVisualize
BU of 7d6r by Molmil
Crystal structure of the Stx2a complexed with MMA betaAla peptide
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, MMA betaAla peptide, Shiga toxin 2 B subunit, ...
Authors:Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K.
Deposit date:2020-10-01
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin.
Commun Biol, 4, 2021
2B7U
DownloadVisualize
BU of 2b7u by Molmil
Ribosome inactivating protein type 1 from Charybdis maritima AGG
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHARYBDIN
Authors:Gessmann, R, Petratos, K.
Deposit date:2005-10-05
Release date:2006-06-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Isolation, characterization, sequencing and crystal structure of charybdin, a type 1 ribosome-inactivating protein from Charybdis maritima agg.
Febs J., 273, 2006
1LLN
DownloadVisualize
BU of 1lln by Molmil
1.6A CRYSTAL STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN-III (PAP-III) WITH METHYLATED LYSINES
Descriptor: Antiviral Protein 3
Authors:Kurinov, I.V, Uckun, F.M.
Deposit date:2002-04-29
Release date:2003-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High resolution X-ray structure of potent anti-HIV pokeweed antiviral protein-III
Biochem.Pharm., 65, 2003
4GUW
DownloadVisualize
BU of 4guw by Molmil
Crystal structure of type 1 Ribosome inactivating protein from Momordica balsamina with lipopolysaccharide at 1.6 Angstrom resolution
Descriptor: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Singh, A, Pandey, S, Kushwaha, G.S, Bhushan, A, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2012-08-30
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of type 1 Ribosome inactivating protein from Momordica balsamina with lipopolysaccharide at 1.6 Angstrom resolution
To be published
4DWM
DownloadVisualize
BU of 4dwm by Molmil
Crystal structure of the complex of type I Ribosome inactivating protein with N-acetylglucosamine at 1.62 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase
Authors:Yamini, S, Pandey, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2012-02-25
Release date:2012-03-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of the complex of type I Ribosome inactivating protein with N-acetylglucosamine at 1.62 A resolution
To be Published
3LE7
DownloadVisualize
BU of 3le7 by Molmil
Crystal structure of PD-L1 from P. dioica in complex with adenine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Ribosome-inactivating protein PD-L1/PD-L2
Authors:Ruggiero, A, Berisio, R.
Deposit date:2010-01-14
Release date:2010-04-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The role of the glycan moiety on the structure-function relationships of PD-L1, type 1 ribosome-inactivating protein from P. dioica leaves
Mol Biosyst, 6, 2010
7MLO
DownloadVisualize
BU of 7mlo by Molmil
Crystal structure of ricin A chain in complex with 5-mesitylthiophene-2-carboxylic acid
Descriptor: 1,2-ETHANEDIOL, 5-(2,4,6-trimethylphenyl)thiophene-2-carboxylic acid, Ricin, ...
Authors:Harijan, R.K, Li, X.P, Cao, B, Augeri, D, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L.
Deposit date:2021-04-28
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Synthesis and Structural Characterization of Ricin Inhibitors Targeting Ribosome Binding Using Fragment-Based Methods and Structure-Based Design.
J.Med.Chem., 64, 2021
5Z3I
DownloadVisualize
BU of 5z3i by Molmil
Crystal Structure of Abrin A chain (Recombinant) in complex with Adenine at 1.65 Angstroms
Descriptor: ADENINE, Abrin A-chain
Authors:Bansia, H, Karande, A.A, Ramakumar, S.
Deposit date:2018-01-08
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for neutralization of cytotoxic abrin by monoclonal antibody D6F10.
FEBS J., 286, 2019
4KMK
DownloadVisualize
BU of 4kmk by Molmil
Crystal structure of Ribosome Inactivating protein from Momordica balsamina at 1.65 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase
Authors:Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of Ribosome Inactivating protein from Momordica balsamina at 1.65 A resolution
To be Published
1LP8
DownloadVisualize
BU of 1lp8 by Molmil
HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT
Descriptor: DIANTHIN 30
Authors:Kurinov, I.V, Rajamohan, F, Uckun, F.M.
Deposit date:2002-05-07
Release date:2004-05-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:High resolution X-ray structure and potent anti-HIV activity of recombinant dianthin antiviral protein.
Arzneimittelforschung, 54, 2004
4LGR
DownloadVisualize
BU of 4lgr by Molmil
Ricin A chain bound to camelid nanobody (VHH3)
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CHLORIDE ION, ...
Authors:Rudolph, M.J, Cheung, J, Franklin, M, Burshteyn, F, Cassidy, M, Gary, E, Mantis, N.
Deposit date:2013-06-28
Release date:2014-06-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structures of Ricin Toxin's Enzymatic Subunit (RTA) in Complex with Neutralizing and Non-Neutralizing Single-Chain Antibodies.
J.Mol.Biol., 426, 2014
4ZA3
DownloadVisualize
BU of 4za3 by Molmil
Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd)-Native-3
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chandran, T, Sharma, A, Vijayan, M.
Deposit date:2015-04-13
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural studies on a non-toxic homologue of type II RIPs from bitter gourd: Molecular basis of non-toxicity, conformational selection and glycan structure.
J.Biosci., 40, 2015
3S9Q
DownloadVisualize
BU of 3s9q by Molmil
Crystal structure of native type 1 ribosome inactivating protein from Momordica balsamina at 1.67 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein
Authors:Pandey, N, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2011-06-02
Release date:2011-07-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structures of a type-1 ribosome inactivating protein from Momordica balsamina in the bound and unbound states.
Biochim.Biophys.Acta, 1824, 2012
4LT4
DownloadVisualize
BU of 4lt4 by Molmil
Crystal structure of arginine inhibited Ribosome inactivating protein from Momordica balsamina at 1.69 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ARGININE, GLYCEROL, ...
Authors:Yamini, S, Pandey, S, Bhushan, A, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2013-07-23
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of arginine inhibited Ribosome inactivating protein from Momordica balsamina at 1.69 A resolution
To be Published
4HUP
DownloadVisualize
BU of 4hup by Molmil
Structure of ricin A chain bound with N-(N-(pterin-7-yl)carbonylglycyl)-L-phenylalanyl)-L-phenylalanine
Descriptor: (2S)-2-[[(2S)-2-[2-[(2-azanyl-4-oxidanylidene-1H-pteridin-7-yl)carbonylamino]ethanoylamino]-3-phenyl-propanoyl]amino]-3-phenyl-propanoic acid, MALONIC ACID, Ricin, ...
Authors:Jasheway, K.R, Monzingo, A.F, Saito, R, Pruet, J.M, Manzano, L.A, Wiget, P.A, Anslyn, E.V, Robertus, J.D.
Deposit date:2012-11-02
Release date:2012-12-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Peptide-conjugated pterins as inhibitors of ricin toxin A.
J.Med.Chem., 56, 2013
3NX9
DownloadVisualize
BU of 3nx9 by Molmil
Crystal structure of type I ribosome inactivating protein in complex with maltose at 1.7A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein, ...
Authors:Pandey, N, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2010-07-13
Release date:2010-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of type I ribosome inactivating protein in complex with maltose at 1.7A resolution
To be Published
3U6Z
DownloadVisualize
BU of 3u6z by Molmil
Crystal structure of the complex formed between type 1 ribosome inactivating protein and adenine at 1.7A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, GLYCEROL, ...
Authors:Pandey, N, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2011-10-13
Release date:2011-12-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of a type-1 ribosome inactivating protein from Momordica balsamina in the bound and unbound states
Biochim.Biophys.Acta, 1824, 2012
5Y48
DownloadVisualize
BU of 5y48 by Molmil
Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4-dione at 1.70 Angstrom resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome inactivating protein, URACIL
Authors:Singh, P.K, Pandey, S, Iqbal, N, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2017-08-01
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Binding and structural studies of the complexes of type 1 ribosome inactivating protein from Momordica balsamina with uracil and uridine.
Proteins, 87, 2019
3V14
DownloadVisualize
BU of 3v14 by Molmil
Crystal structure of the complex of type I Ribosome inactivating protein complexed with Trehalose at 1.70 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein, ...
Authors:Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2011-12-09
Release date:2012-01-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the complex of type I Ribosome inactivating protein complexed with Trehalose at 1.70 A resolution
To be Published
4M5A
DownloadVisualize
BU of 4m5a by Molmil
Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, NG,NG-DIMETHYL-L-ARGININE, rRNA N-glycosidase
Authors:Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2013-08-08
Release date:2013-08-28
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution
To be Published
3N3X
DownloadVisualize
BU of 3n3x by Molmil
Crystal Structure of the complex formed between type I ribosome inactivating protein and hexapeptide Ser-Asp-Asp-Asp-Met-Gly at 1.7 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GUANINE, Ribosome inactivating protein, ...
Authors:Kushwaha, G.S, Vikram, G, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2010-05-20
Release date:2010-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the complex formed between type I ribosome inactivating protein and hexapeptide Ser-Asp-Asp-Asp-Met-Gly at 1.7 A resolution
To be Published
5Z3J
DownloadVisualize
BU of 5z3j by Molmil
Crystal Structure of Abrin A chain (Recombinant) in complex with Nicotinamide at 1.7 Angstroms
Descriptor: Abrin A-chain, IMIDAZOLE, NICOTINAMIDE
Authors:Bansia, H, Karande, A.A, Ramakumar, S.
Deposit date:2018-01-08
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for neutralization of cytotoxic abrin by monoclonal antibody D6F10.
FEBS J., 286, 2019
3MRW
DownloadVisualize
BU of 3mrw by Molmil
Crystal Structure of type I ribosome inactivating protein from Momordica balsamina at 1.7 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Kushwaha, G.S, Pandey, N, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2010-04-29
Release date:2010-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of type I ribosome inactivating protein from Momordica balsamina at 1.7 A resolution
To be Published

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon