2F6J
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CRYSTAL STRUCTURE OF PHD FINGER-LINKER-BROMODOMAIN FRAGMENT OF HUMAN BPTF IN THE H3(1-15)K4ME3 BOUND STATE
Descriptor:bromodomain PHD finger transcription factor, histone H3, N-terminal, ...
Authors:Li, H., Patel, D.J.
Deposit date:2005-11-29
Release date:2006-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature, 442, 2006
2F6N
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CRYSTAL STRUCTURE OF PHD FINGER-LINKER-BROMODOMAIN FRAGMENT OF HUMAN BPTF IN THE FREE FORM
Descriptor:bromodomain PHD finger transcription factor, ZINC ION
Authors:Li, H., Patel, D.J.
Deposit date:2005-11-29
Release date:2006-07-11
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature, 442, 2006
2FSA
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CRYSTAL STRUCTURE OF PHD FINGER-LINKER-BROMODOMAIN FRAGMENT OF HUMAN BPTF IN THE H3(1-15)K4ME2 BOUND STATE
Descriptor:bromodomain PHD finger transcription factor, Histone H3(1-15)K4me2 peptide, ZINC ION
Authors:Li, H., Patel, D.J.
Deposit date:2006-01-21
Release date:2006-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
Nature, 442, 2006
2K16
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SOLUTION STRUCTURE OF THE FREE TAF3 PHD DOMAIN
Descriptor:Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:van Ingen, H., van Schaik, F.M.A., Wienk, H., Timmers, M., Boelens, R.
Deposit date:2008-02-22
Release date:2008-07-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Recognition of the H3K4me3 mark by the TAF3-PHD finger
To be Published
2M3H
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STRUCTURE OF DIDO PHD DOMAIN
Descriptor:Death-inducer obliterator 1, ZINC ION
Authors:Santiveri, C.M., Perez-Canadillas, J.M., Jimenez, M.
Deposit date:2013-01-19
Release date:2013-08-07
Method:SOLUTION NMR
Cite:NMR structure note: PHD domain from death inducer obliterator protein and its interaction with H3K4me3.
J.Biomol.Nmr, 56, 2013
5A3N
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CRYSTAL STRUCTURE OF HUMAN PLU-1 (JARID1B) IN COMPLEX WITH KDOAM25A
Descriptor:LYSINE-SPECIFIC DEMETHYLASE 5B, ZINC ION, MANGANESE (II) ION, ...
Authors:Srikannathasan, V., Johansson, C., Gileadi, C., Nuzzi, A., Ruda, G.F., Kopec, J., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Brennan, P., Oppermann, U.
Deposit date:2015-06-02
Release date:2015-07-08
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Potent and Selective KDM5 Inhibitor Stops Cellular Demethylation of H3K4me3 at Transcription Start Sites and Proliferation of MM1S Myeloma Cells.
Cell Chem Biol, 24, 2017
5IX2
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CRYSTAL STRUCTURE OF MOUSE MORC3 ATPASE-CW CASSETTE IN COMPLEX WITH AMPPNP AND UNMODIFIED H3 PEPTIDE
Descriptor:MORC family CW-type zinc finger protein 3, peptide from Histone H3.1, ZINC ION, ...
Authors:Li, S., Du, J., Patel, D.J.
Deposit date:2016-03-23
Release date:2016-08-17
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin
Proc.Natl.Acad.Sci.USA, 113, 2016
5ZNR
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CRYSTAL STRUCTURE OF PTSHL IN COMPLEX WITH AN H3K27ME3 PEPTIDE
Descriptor:SHORT LIFE family protein, 17-mer peptide from Histone H3.2, ZINC ION, ...
Authors:Lv, X., Du, J.
Deposit date:2018-04-10
Release date:2018-07-18
Method:X-RAY DIFFRACTION (3.202 Å)
Cite:Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.
Nat Commun, 9, 2018
3MEA
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CRYSTAL STRUCTURE OF THE SGF29 IN COMPLEX WITH H3K4ME3
Descriptor:SAGA-associated factor 29 homolog, Histone H3
Authors:Bian, C., Xu, C., Tempel, W., MacKenzie, F., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
3ME9
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CRYSTAL STRUCTURE OF SGF29 IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:SAGA-associated factor 29 homolog, Histone H3, UNKNOWN ATOM OR ION, ...
Authors:Bian, C., Tempel, W., Xu, C., Guo, Y., Dong, A., Crombet, L., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-28
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.
Embo J., 30, 2011
3MP1
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COMPLEX STRUCTURE OF SGF29 AND TRIMETHYLATED H3K4
Descriptor:Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29, H3K4me3 peptide, MALTOSE, ...
Authors:Li, J., Ruan, J., Wu, M., Xue, X., Zang, J.
Deposit date:2010-04-24
Release date:2011-05-04
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
Embo J., 30, 2011
2V83
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, HISTONE H3, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-02
Release date:2007-12-11
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104, 2007
2V89
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE AT 1.1A RESOLUTION
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, HISTONE H3, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-03
Release date:2007-12-11
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Rag2 Phd Finger Couples Histone H3 Lysine 4 Trimethylation with V(D)J Recombination.
Nature, 450, 2007
2RR4
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COMPLEX STRUCTURE OF THE ZF-CW DOMAIN AND THE H3K4ME3 PEPTIDE
Descriptor:Zinc finger CW-type PWWP domain protein 1, Histone H3, ZINC ION
Authors:He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-03-24
Release date:2010-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural insight into the zinc finger CW domain as a histone modification reader
Structure, 18, 2010
2YYR
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STRUCTURAL ANALYSIS OF PHD DOMAIN OF PYGOPUS COMPLEXED WITH TRIMETHYLATED HISTONE H3 PEPTIDE
Descriptor:Pygopus homolog 1, H3K4Me3 peptide, ZINC ION
Authors:Nakamura, Y., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-01
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
To be Published
3N9L
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CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE AND NOG
Descriptor:Putative uncharacterized protein, Histone H3 peptide, FE (II) ION, ...
Authors:Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.
Deposit date:2010-05-31
Release date:2010-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Cell Res., 20, 2010
3N9O
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CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K9ME2 PEPTIDE AND NOG
Descriptor:Putative uncharacterized protein, Histone H3 peptide, FE (II) ION, ...
Authors:Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.
Deposit date:2010-05-31
Release date:2010-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.309 Å)
Cite:Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Cell Res., 20, 2010
3N9Q
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CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K27ME2 PEPTIDE AND NOG
Descriptor:Putative uncharacterized protein, Histone H3 peptide, FE (II) ION, ...
Authors:Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.
Deposit date:2010-05-31
Release date:2010-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Cell Res., 20, 2010
4L58
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CRYSTAL STRUCTURE OF THE MLL5 PHD FINGER IN COMPLEX WITH H3K4ME3
Descriptor:Histone-lysine N-methyltransferase MLL5, Histone H3 peptide, ZINC ION
Authors:Tong, Q., Ali, M., Kutateladze, T.G.
Deposit date:2013-06-10
Release date:2013-06-26
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Molecular basis for chromatin binding and regulation of MLL5.
Proc.Natl.Acad.Sci.USA, 110, 2013
4L7X
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CRYSTAL STRUCTURE OF THE DIDO PHD FINGER IN COMPLEX WITH H3K4ME3
Descriptor:Death-inducer obliterator 1, Histone H3 peptide, ZINC ION
Authors:Tong, Q., Gatchalian, J., Kutateladze, T.G.
Deposit date:2013-06-14
Release date:2013-07-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Dido3 PHD Modulates Cell Differentiation and Division.
Cell Rep, 4, 2013
3SOW
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STRUCTURE OF UHRF1 PHD FINGER IN COMPLEX WITH HISTONE H3K4ME3 1-9 PEPTIDE
Descriptor:E3 ubiquitin-protein ligase UHRF1, Histone H3, ZINC ION
Authors:Rajakumara, E., Patel, D.J.
Deposit date:2011-06-30
Release date:2011-08-03
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.9501 Å)
Cite:PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
4MZG
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CRYSTAL STRUCTURE OF HUMAN SPINDLIN1 BOUND TO HISTONE H3K4ME3 PEPTIDE
Descriptor:Peptide from Histone H3.2, Spindlin-1, (4R)-2-METHYLPENTANE-2,4-DIOL, ...
Authors:Su, X., Ding, X., Li, H.
Deposit date:2013-09-30
Release date:2014-03-26
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Molecular basis underlying histone H3 lysine-arginine methylation pattern readout by Spin/Ssty repeats of Spindlin1
Genes Dev., 28, 2014
2V85
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME1K4ME3 PEPTIDE
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, H3R2ME1K4ME3 PEPTIDE, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-02
Release date:2007-12-11
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104, 2007
2V86
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2AK4ME3 PEPTIDE
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, H3R2ME2AK4ME3 PEPTIDE, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-02
Release date:2007-12-11
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104, 2007
2V87
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CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2SK4ME3 PEPTIDE
Descriptor:VDJ RECOMBINATION-ACTIVATING PROTEIN 2, HISTONE H3.2, ZINC ION
Authors:Ramon-Maiques, S., Yang, W.
Deposit date:2007-08-02
Release date:2007-12-11
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104, 2007
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