PDB: 2103 resultsInfo pagesStatus searchChemie searchBIRD

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9F33	Cryo-EM structure of Dopamine 3 Receptor:Go complex bound to bitopic FOB02-04A - Conformation A Descriptor: Antibody scFv16, Green fluorescent protein,D(3) dopamine receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Arroyo-Urea, S, Garcia-Nafria, J. Deposit date: 2024-04-24 Release date: 2024-09-18 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: A bitopic agonist bound to the dopamine 3 receptor reveals a selectivity site. Nat Commun, 15, 2024
9F34	Cryo-EM structure of Dopamine 3 receptor:Go complex bound to bitopic FOB02-04A - Conformation B Descriptor: Antibody scFv16, Green fluorescent protein,D(3) dopamine receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Arroyo-Urea, S, Garcia-Nafria, J. Deposit date: 2024-04-24 Release date: 2024-09-18 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: A bitopic agonist bound to the dopamine 3 receptor reveals a selectivity site. Nat Commun, 15, 2024
9CAI	High-resolution C. elegans 80S ribosome structure - class 2 Descriptor: 18S rRNA, 28S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ... Authors: Sehgal, E, Serrao, V.H.B, Arribere, J. Deposit date: 2024-06-17 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity. Rna, 2024
8CQ7	Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosome Descriptor: 18S, 25S, 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose, ... Authors: Kolosova, O, Zgadzay, Y, Yusupov, M. Deposit date: 2023-03-03 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Drug-induced rotational movement of the ribosome is a key factor for read-through enhancement To Be Published
8S8E	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (3.85 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8S8J	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8S8G	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8S8I	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8S8D	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (3.45 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8RW1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-02-02 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8S8F	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (3.95 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8S8H	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2) Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ... Authors: Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T. Deposit date: 2024-03-06 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural basis of AUC codon discrimination during translation initiation in yeast. Nucleic Acids Res., 2024
8XH0	Monoclinic crystal structure of green fluorescent protein nowGFP at pH 4.8 Descriptor: GLYCEROL, nowGFP Authors: Kim, C.U, Kim, J.K. Deposit date: 2023-12-16 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing. Acta Crystallogr D Struct Biol, 2024
8XH1	Orthorhombic crystal structure of green fluorescent protein nowGFP at pH 9.0 Descriptor: GLYCEROL, nowGFP Authors: Kim, C.U, Kim, J.K. Deposit date: 2023-12-16 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing. Acta Crystallogr D Struct Biol, 2024
8XH2	Orthorhombic crystal structure of green fluorescent protein nowGFP at pH 6.0 Descriptor: GLYCEROL, nowGFP Authors: Kim, C.U, Kim, J.K. Deposit date: 2023-12-16 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing. Acta Crystallogr D Struct Biol, 2024
8YAN	Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound Descriptor: RNA (33-MER), ~{N},~{N}-dimethyl-2-[(1-methyl-9~{H}-pyrido[3,4-b]indol-7-yl)oxy]ethanamine Authors: Numata, T, Schneekloth, J.S. Deposit date: 2024-02-09 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Mechanistic Analysis of Riboswitch Ligand Interactions Provides Insights into Pharmacological Control over Gene Expression. Biorxiv, 2024
8YAM	Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound Descriptor: 2-[2-(dimethylamino)ethoxy]xanthen-9-one, RNA (33-MER) Authors: Numata, T, Parmar, S, Schneekloth, J.S. Deposit date: 2024-02-09 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Mechanistic Analysis of Riboswitch Ligand Interactions Provides Insights into Pharmacological Control over Gene Expression. Biorxiv, 2024
8QEW	Eosinophil Derived Neurotoxin/RNase 2 in complex with Tartrate Descriptor: L(+)-TARTARIC ACID, Non-secretory ribonuclease Authors: Li, J, Kang, X, Prats-Ejarque, G, Boix, E. Deposit date: 2023-09-01 Release date: 2024-09-11 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Eosinophil Derived Neurotoxin/RNase 2 in complex with Tartrate To Be Published
9BH5	High-resolution C. elegans 80S ribosome structure - class 1 Descriptor: 18S rRNA, 28S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ... Authors: Sehgal, E, Serrao, V.H.B, Arribere, J. Deposit date: 2024-04-19 Release date: 2024-09-04 Last modified: 2024-09-11 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity. Rna, 2024
9C6W	Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (2 molecules/asymmetric unit) Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15-PENTAOXAHEPTADECANE, CHLORIDE ION, ... Authors: Sharma, R, Amdare, N.P, Celikgil, A, Garforth, S.J, DiLorenzo, T.P, Almo, S.C, Ghosh, A. Deposit date: 2024-06-09 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and biochemical analysis of highly similar HLA-B allotypes differentially associated with type 1 diabetes. J.Biol.Chem., 2024
9C6X	Crystal Structure of a single chain trimer composed of HLA-B*39:01 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 Descriptor: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, NACHT, ... Authors: Sharma, R, Amdare, N.P, Celikgil, A, Garforth, S.J, DiLorenzo, T.P, Almo, S.C, Ghosh, A. Deposit date: 2024-06-09 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and biochemical analysis of highly similar HLA-B allotypes differentially associated with type 1 diabetes. J.Biol.Chem., 2024
9BLN	The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex Descriptor: 40S ribosomal protein S14, ACETIC ACID, Eukaryotic initiation factor 4A-I, ... Authors: Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Zuber, P, Yifei, D, Albacete-Albacete, L, Ramakrishnan, V, S Fraser, C. Deposit date: 2024-04-30 Release date: 2024-09-04 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit. Nat Commun, 15, 2024
9F8G	Photostatin (photoswitchable azo-combretastatin) Z-PST27 bound to tubulin-DARPin D1 complex Descriptor: 5-[(~{Z})-(3,5-diethyl-4-methoxy-phenyl)diazenyl]-2-methyl-phenol, CALCIUM ION, Designed Ankyrin Repeat Protein (DARPIN) D1, ... Authors: Wranik, M, Steinmetz, M.O. Deposit date: 2024-05-06 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A photo-SAR study of photoswitchable azobenzene tubulin-inhibiting antimitotics identifying a general method for near-quantitative photocontrol. Chem Sci, 15, 2024
9BKD	The structure of human Pdcd4 bound to the 40S small ribosomal subunit Descriptor: 18S rRNA, 40S ribosomal protein S12, 40S ribosomal protein S13, ... Authors: Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Zuber, P, Albacete-Albacete, L, Ramakrishnan, V, S.Fraser, C. Deposit date: 2024-04-27 Release date: 2024-09-04 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit. Nat Commun, 15, 2024
9C6V	Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (1 molecule/asymmetric unit) Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... Authors: Sharma, R, Amdare, N.P, Celikgil, A, Garforth, S.J, DiLorenzo, T.P, Almo, S.C, Ghosh, A. Deposit date: 2024-06-09 Release date: 2024-09-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and biochemical analysis of highly similar HLA-B allotypes differentially associated with type 1 diabetes. J.Biol.Chem., 2024

 

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