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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9RX4

VPS34-CI bound to NRBF2 and RAB1A

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000407cellular_componentphagophore assembly site
A0000425biological_processpexophagy
A0004672molecular_functionprotein kinase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005768cellular_componentendosome
A0005770cellular_componentlate endosome
A0005776cellular_componentautophagosome
A0005777cellular_componentperoxisome
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0005930cellular_componentaxoneme
A0006622biological_processprotein targeting to lysosome
A0006897biological_processendocytosis
A0006914biological_processautophagy
A0007032biological_processendosome organization
A0010506biological_processregulation of autophagy
A0016020cellular_componentmembrane
A0016236biological_processmacroautophagy
A0016241biological_processregulation of macroautophagy
A0016301molecular_functionkinase activity
A0016303molecular_function1-phosphatidylinositol-3-kinase activity
A0016485biological_processprotein processing
A0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
A0030496cellular_componentmidbody
A0030670cellular_componentphagocytic vesicle membrane
A0032465biological_processregulation of cytokinesis
A0034271cellular_componentphosphatidylinositol 3-kinase complex, class III, type I
A0034272cellular_componentphosphatidylinositol 3-kinase complex, class III, type II
A0035032cellular_componentphosphatidylinositol 3-kinase complex, class III
A0036092biological_processphosphatidylinositol-3-phosphate biosynthetic process
A0042149biological_processcellular response to glucose starvation
A0043201biological_processresponse to L-leucine
A0043491biological_processphosphatidylinositol 3-kinase/protein kinase B signal transduction
A0044754cellular_componentautolysosome
A0044829biological_processhost-mediated activation of viral genome replication
A0045022biological_processearly endosome to late endosome transport
A0045335cellular_componentphagocytic vesicle
A0045954biological_processpositive regulation of natural killer cell mediated cytotoxicity
A0046854biological_processphosphatidylinositol phosphate biosynthetic process
A0048015biological_processphosphatidylinositol-mediated signaling
A0048488biological_processsynaptic vesicle endocytosis
A0052742molecular_functionphosphatidylinositol kinase activity
A0097352biological_processautophagosome maturation
A0098794cellular_componentpostsynapse
A0098830cellular_componentpresynaptic endosome
A0098845cellular_componentpostsynaptic endosome
A0098978cellular_componentglutamatergic synapse
A0098982cellular_componentGABA-ergic synapse
A1903061biological_processpositive regulation of protein lipidation
B0000425biological_processpexophagy
B0004672molecular_functionprotein kinase activity
B0004674molecular_functionprotein serine/threonine kinase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005770cellular_componentlate endosome
B0005776cellular_componentautophagosome
B0005829cellular_componentcytosol
B0005930cellular_componentaxoneme
B0006468biological_processprotein phosphorylation
B0006622biological_processprotein targeting to lysosome
B0006623biological_processprotein targeting to vacuole
B0010506biological_processregulation of autophagy
B0016020cellular_componentmembrane
B0016236biological_processmacroautophagy
B0016241biological_processregulation of macroautophagy
B0030670cellular_componentphagocytic vesicle membrane
B0032465biological_processregulation of cytokinesis
B0032801biological_processreceptor catabolic process
B0034271cellular_componentphosphatidylinositol 3-kinase complex, class III, type I
B0034272cellular_componentphosphatidylinositol 3-kinase complex, class III, type II
B0035032cellular_componentphosphatidylinositol 3-kinase complex, class III
B0036092biological_processphosphatidylinositol-3-phosphate biosynthetic process
B0042149biological_processcellular response to glucose starvation
B0043491biological_processphosphatidylinositol 3-kinase/protein kinase B signal transduction
B0045022biological_processearly endosome to late endosome transport
B0045324biological_processlate endosome to vacuole transport
B0071561cellular_componentnucleus-vacuole junction
B0097352biological_processautophagosome maturation
B0106310molecular_functionprotein serine kinase activity
C0000045biological_processautophagosome assembly
C0000407cellular_componentphagophore assembly site
C0000423biological_processmitophagy
C0001666biological_processresponse to hypoxia
C0002753biological_processcytoplasmic pattern recognition receptor signaling pathway
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005768cellular_componentendosome
C0005776cellular_componentautophagosome
C0005783cellular_componentendoplasmic reticulum
C0005789cellular_componentendoplasmic reticulum membrane
C0005794cellular_componentGolgi apparatus
C0005802cellular_componenttrans-Golgi network
C0005829cellular_componentcytosol
C0006622biological_processprotein targeting to lysosome
C0006914biological_processautophagy
C0006968biological_processcellular defense response
C0006995biological_processcellular response to nitrogen starvation
C0007080biological_processmitotic metaphase chromosome alignment
C0007254biological_processJNK cascade
C0007623biological_processcircadian rhythm
C0009410biological_processresponse to xenobiotic stimulus
C0010008cellular_componentendosome membrane
C0010040biological_processresponse to iron(II) ion
C0010288biological_processresponse to lead ion
C0010506biological_processregulation of autophagy
C0010508biological_processpositive regulation of autophagy
C0016236biological_processmacroautophagy
C0016241biological_processregulation of macroautophagy
C0016604cellular_componentnuclear body
C0019901molecular_functionprotein kinase binding
C0030425cellular_componentdendrite
C0030674molecular_functionprotein-macromolecule adaptor activity
C0031410cellular_componentcytoplasmic vesicle
C0031625molecular_functionubiquitin protein ligase binding
C0031667biological_processresponse to nutrient levels
C0031966cellular_componentmitochondrial membrane
C0032465biological_processregulation of cytokinesis
C0032473cellular_componentcytoplasmic side of mitochondrial outer membrane
C0032801biological_processreceptor catabolic process
C0032991cellular_componentprotein-containing complex
C0033197biological_processresponse to vitamin E
C0034198biological_processcellular response to amino acid starvation
C0034271cellular_componentphosphatidylinositol 3-kinase complex, class III, type I
C0034272cellular_componentphosphatidylinositol 3-kinase complex, class III, type II
C0035032cellular_componentphosphatidylinositol 3-kinase complex, class III
C0036092biological_processphosphatidylinositol-3-phosphate biosynthetic process
C0038066biological_processp38MAPK cascade
C0042149biological_processcellular response to glucose starvation
C0042802molecular_functionidentical protein binding
C0043066biological_processnegative regulation of apoptotic process
C0043069biological_processnegative regulation of programmed cell death
C0043548molecular_functionphosphatidylinositol 3-kinase binding
C0043652biological_processengulfment of apoptotic cell
C0045022biological_processearly endosome to late endosome transport
C0045324biological_processlate endosome to vacuole transport
C0045335cellular_componentphagocytic vesicle
C0051020molecular_functionGTPase binding
C0051897biological_processpositive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
C0060090molecular_functionmolecular adaptor activity
C0060395biological_processSMAD protein signal transduction
C0062029biological_processpositive regulation of cytoplasmic stress granule assembly
C0065003biological_processprotein-containing complex assembly
C0070301biological_processcellular response to hydrogen peroxide
C0071275biological_processcellular response to aluminum ion
C0071280biological_processcellular response to copper ion
C0071364biological_processcellular response to epidermal growth factor stimulus
C0090650biological_processcellular response to oxygen-glucose deprivation
C0097352biological_processautophagosome maturation
C0098780biological_processresponse to mitochondrial depolarisation
C1902425biological_processpositive regulation of attachment of mitotic spindle microtubules to kinetochore
C1905672biological_processnegative regulation of lysosome organization
C2000786biological_processpositive regulation of autophagosome assembly
C2001244biological_processpositive regulation of intrinsic apoptotic signaling pathway
D0000045biological_processautophagosome assembly
D0000407cellular_componentphagophore assembly site
D0000421cellular_componentautophagosome membrane
D0000423biological_processmitophagy
D0001933biological_processnegative regulation of protein phosphorylation
D0001934biological_processpositive regulation of protein phosphorylation
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005776cellular_componentautophagosome
D0005789cellular_componentendoplasmic reticulum membrane
D0005829cellular_componentcytosol
D0005930cellular_componentaxoneme
D0006622biological_processprotein targeting to lysosome
D0006914biological_processautophagy
D0008333biological_processendosome to lysosome transport
D0009267biological_processcellular response to starvation
D0010608biological_processpost-transcriptional regulation of gene expression
D0016236biological_processmacroautophagy
D0016240biological_processautophagosome membrane docking
D0016241biological_processregulation of macroautophagy
D0034045cellular_componentphagophore assembly site membrane
D0035014molecular_functionphosphatidylinositol 3-kinase regulator activity
D0035032cellular_componentphosphatidylinositol 3-kinase complex, class III
D0036092biological_processphosphatidylinositol-3-phosphate biosynthetic process
D0042149biological_processcellular response to glucose starvation
D0043491biological_processphosphatidylinositol 3-kinase/protein kinase B signal transduction
D0043495molecular_functionprotein-membrane adaptor activity
D0044233cellular_componentmitochondria-associated endoplasmic reticulum membrane contact site
D0045022biological_processearly endosome to late endosome transport
D0045335cellular_componentphagocytic vesicle
D0051020molecular_functionGTPase binding
D0061635biological_processregulation of protein complex stability
D0097352biological_processautophagosome maturation
D0097629cellular_componentextrinsic component of omegasome membrane
D0097632cellular_componentextrinsic component of phagophore assembly site membrane
D0098780biological_processresponse to mitochondrial depolarisation
D0141039molecular_functionphosphatidylinositol 3-kinase inhibitor activity
E0000045biological_processautophagosome assembly
E0000139cellular_componentGolgi membrane
E0003924molecular_functionGTPase activity
E0003925molecular_functionG protein activity
E0005515molecular_functionprotein binding
E0005769cellular_componentearly endosome
E0005783cellular_componentendoplasmic reticulum
E0005794cellular_componentGolgi apparatus
E0005829cellular_componentcytosol
E0006886biological_processintracellular protein transport
E0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
E0006897biological_processendocytosis
E0006914biological_processautophagy
E0007030biological_processGolgi organization
E0012505cellular_componentendomembrane system
E0016020cellular_componentmembrane
E0016192biological_processvesicle-mediated transport
E0016477biological_processcell migration
E0019068biological_processvirion assembly
E0030252biological_processgrowth hormone secretion
E0030658cellular_componenttransport vesicle membrane
E0032402biological_processmelanosome transport
E0032757biological_processpositive regulation of interleukin-8 production
E0034446biological_processsubstrate adhesion-dependent cell spreading
E0042470cellular_componentmelanosome
E0042742biological_processdefense response to bacterium
E0043025cellular_componentneuronal cell body
E0045296molecular_functioncadherin binding
E0047496biological_processvesicle transport along microtubule
E0060271biological_processcilium assembly
E0070062cellular_componentextracellular exosome
E0090110biological_processCOPII-coated vesicle cargo loading
E0090557biological_processestablishment of endothelial intestinal barrier
E1903020biological_processpositive regulation of glycoprotein metabolic process
I0000045biological_processautophagosome assembly
I0000407cellular_componentphagophore assembly site
I0000423biological_processmitophagy
I0001666biological_processresponse to hypoxia
I0002753biological_processcytoplasmic pattern recognition receptor signaling pathway
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005737cellular_componentcytoplasm
I0005739cellular_componentmitochondrion
I0005768cellular_componentendosome
I0005776cellular_componentautophagosome
I0005783cellular_componentendoplasmic reticulum
I0005789cellular_componentendoplasmic reticulum membrane
I0005794cellular_componentGolgi apparatus
I0005802cellular_componenttrans-Golgi network
I0005829cellular_componentcytosol
I0006622biological_processprotein targeting to lysosome
I0006914biological_processautophagy
I0006968biological_processcellular defense response
I0006995biological_processcellular response to nitrogen starvation
I0007080biological_processmitotic metaphase chromosome alignment
I0007254biological_processJNK cascade
I0007623biological_processcircadian rhythm
I0009410biological_processresponse to xenobiotic stimulus
I0010008cellular_componentendosome membrane
I0010040biological_processresponse to iron(II) ion
I0010288biological_processresponse to lead ion
I0010506biological_processregulation of autophagy
I0010508biological_processpositive regulation of autophagy
I0016236biological_processmacroautophagy
I0016241biological_processregulation of macroautophagy
I0016604cellular_componentnuclear body
I0019901molecular_functionprotein kinase binding
I0030425cellular_componentdendrite
I0030674molecular_functionprotein-macromolecule adaptor activity
I0031410cellular_componentcytoplasmic vesicle
I0031625molecular_functionubiquitin protein ligase binding
I0031667biological_processresponse to nutrient levels
I0031966cellular_componentmitochondrial membrane
I0032465biological_processregulation of cytokinesis
I0032473cellular_componentcytoplasmic side of mitochondrial outer membrane
I0032801biological_processreceptor catabolic process
I0032991cellular_componentprotein-containing complex
I0033197biological_processresponse to vitamin E
I0034198biological_processcellular response to amino acid starvation
I0034271cellular_componentphosphatidylinositol 3-kinase complex, class III, type I
I0034272cellular_componentphosphatidylinositol 3-kinase complex, class III, type II
I0035032cellular_componentphosphatidylinositol 3-kinase complex, class III
I0036092biological_processphosphatidylinositol-3-phosphate biosynthetic process
I0038066biological_processp38MAPK cascade
I0042149biological_processcellular response to glucose starvation
I0042802molecular_functionidentical protein binding
I0043066biological_processnegative regulation of apoptotic process
I0043069biological_processnegative regulation of programmed cell death
I0043548molecular_functionphosphatidylinositol 3-kinase binding
I0043652biological_processengulfment of apoptotic cell
I0045022biological_processearly endosome to late endosome transport
I0045324biological_processlate endosome to vacuole transport
I0045335cellular_componentphagocytic vesicle
I0051020molecular_functionGTPase binding
I0051897biological_processpositive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
I0060090molecular_functionmolecular adaptor activity
I0060395biological_processSMAD protein signal transduction
I0062029biological_processpositive regulation of cytoplasmic stress granule assembly
I0065003biological_processprotein-containing complex assembly
I0070301biological_processcellular response to hydrogen peroxide
I0071275biological_processcellular response to aluminum ion
I0071280biological_processcellular response to copper ion
I0071364biological_processcellular response to epidermal growth factor stimulus
I0090650biological_processcellular response to oxygen-glucose deprivation
I0097352biological_processautophagosome maturation
I0098780biological_processresponse to mitochondrial depolarisation
I1902425biological_processpositive regulation of attachment of mitotic spindle microtubules to kinetochore
I1905672biological_processnegative regulation of lysosome organization
I2000786biological_processpositive regulation of autophagosome assembly
I2001244biological_processpositive regulation of intrinsic apoptotic signaling pathway
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0005737cellular_componentcytoplasm
L0005776cellular_componentautophagosome
L0006914biological_processautophagy
L0031410cellular_componentcytoplasmic vesicle
L0034976biological_processresponse to endoplasmic reticulum stress
L0035032cellular_componentphosphatidylinositol 3-kinase complex, class III
Functional Information from PROSITE/UniProt
site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. LLLiGDSGVGKssL
ChainResidueDetails
ELEU14-LEU27
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues149
DetailsDomain: {"description":"C2 PI3K-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00880","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues266
DetailsDomain: {"description":"PI3K/PI4K catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00269","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues21
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues6
DetailsRegion: {"description":"G-loop","evidences":[{"source":"PROSITE-ProRule","id":"PRU00269","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues8
DetailsRegion: {"description":"Catalytic loop","evidences":[{"source":"PROSITE-ProRule","id":"PRU00269","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues21
DetailsRegion: {"description":"Activation loop","evidences":[{"source":"PROSITE-ProRule","id":"PRU00269","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues14
DetailsCompositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine; by AMPK","evidences":[{"source":"UniProtKB","id":"Q6PF93","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine; by AMPK","evidences":[{"source":"UniProtKB","id":"Q6PF93","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"O88763","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19369195","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues37
DetailsRepeat: {"description":"HEAT 1"}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues37
DetailsRepeat: {"description":"HEAT 2"}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues38
DetailsRepeat: {"description":"HEAT 3"}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues39
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues39
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues41
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues39
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues41
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues41
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues31
DetailsRepeat: {"description":"WD 7"}
ChainResidueDetails
site_idSWS_FT_FI23
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI24
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI25
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18691976","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI26
Number of Residues1
DetailsLipidation: {"description":"N-myristoyl glycine","evidences":[{"source":"PubMed","id":"25255805","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8999962","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI27
Number of Residues47
DetailsRegion: {"description":"Interaction with BCL2 and BCL2L1 isoform Bcl-X(L)","evidences":[{"source":"PubMed","id":"17446862","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI28
Number of Residues237
DetailsCoiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI29
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine; by DAPK1","evidences":[{"source":"PubMed","id":"19180116","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI30
Number of Residues1
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"28445460","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI31
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"23974797","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI32
Number of Residues15
DetailsRegion: {"description":"Cysteine repeats"}
ChainResidueDetails
site_idSWS_FT_FI33
Number of Residues8
DetailsRegion: {"description":"Switch-I","evidences":[{"source":"PROSITE-ProRule","id":"PRU00753","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22416225","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3SFV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3TKL","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI34
Number of Residues16
DetailsRegion: {"description":"Switch-II","evidences":[{"source":"PROSITE-ProRule","id":"PRU00753","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22416225","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3SFV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3TKL","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI35
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22416225","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3TKL","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI36
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22416225","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22939626","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23588383","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23821544","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human RAB1A in complex with GDP.","authoringGroup":["Structural genomics consortium (SGC)"]}},{"source":"PDB","id":"2FOL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3TKL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FME","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4IRU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JVS","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI37
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22416225","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22939626","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23588383","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23821544","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human RAB1A in complex with GDP.","authoringGroup":["Structural genomics consortium (SGC)"]}},{"source":"PDB","id":"3TKL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FME","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4IRU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JVS","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI38
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22416225","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22939626","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23588383","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of human RAB1A in complex with GDP.","authoringGroup":["Structural genomics consortium (SGC)"]}},{"source":"PDB","id":"3TKL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FMD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FME","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JVS","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI39
Number of Residues1
DetailsModified residue: {"description":"(Microbial infection) O-(2-cholinephosphoryl)serine","evidences":[{"source":"PubMed","id":"21822290","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22158903","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI40
Number of Residues1
DetailsGlycosylation: {"description":"(Microbial infection) N-beta-linked (GlcNAc) arginine","evidences":[{"source":"PubMed","id":"32504010","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI41
Number of Residues3
DetailsGlycosylation: {"description":"(Microbial infection) N-beta-linked (GlcNAc) arginine","evidences":[{"source":"PubMed","id":"32504010","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32974215","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI42
Number of Residues3
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P51153","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

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PDB entries from 2026-10-07

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