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9BAQ

CryoEM structure of DIM2-HP1-H3K9me3-DNA complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003682molecular_functionchromatin binding
A0008168molecular_functionmethyltransferase activity
B0000792cellular_componentheterochromatin
B0005634cellular_componentnucleus
B0006338biological_processchromatin remodeling
C0000792cellular_componentheterochromatin
C0005634cellular_componentnucleus
C0006338biological_processchromatin remodeling
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0030527molecular_functionstructural constituent of chromatin
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0030527molecular_functionstructural constituent of chromatin
Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DfIaaGsPCpGFS
ChainResidueDetails
AASP918-SER930

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
DLYS14-LEU20

site_idPS00598
Number of Residues22
DetailsCHROMO_1 Chromo domain signature. FlVKWeGYekksdqTWEPedtL
ChainResidueDetails
BPHE94-LEU115

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000250
ChainResidueDetails
DLYS4
DLYS14
DLYS18
DLYS23
FLYS4
FLYS14
FLYS18
FLYS23

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250
ChainResidueDetails
DM3L9
FM3L9

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250
ChainResidueDetails
DSER10
FSER10

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000250
ChainResidueDetails
DTHR11
FTHR11

237992

PDB entries from 2025-06-25

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