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8RGG

Structure of dynein-2 intermediate chain DYNC2I2 (WDR34) in complex with dynein-2 heavy chain DYNC2H1.

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
B0001822biological_processkidney development
B0003774molecular_functioncytoskeletal motor activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005794cellular_componentGolgi apparatus
B0005856cellular_componentcytoskeleton
B0005868cellular_componentcytoplasmic dynein complex
B0005874cellular_componentmicrotubule
B0005886cellular_componentplasma membrane
B0005929cellular_componentcilium
B0005930cellular_componentaxoneme
B0006996biological_processorganelle organization
B0007030biological_processGolgi organization
B0007368biological_processdetermination of left/right symmetry
B0007507biological_processheart development
B0008569molecular_functionminus-end-directed microtubule motor activity
B0009953biological_processdorsal/ventral pattern formation
B0016485biological_processprotein processing
B0021522biological_processspinal cord motor neuron differentiation
B0030030biological_processcell projection organization
B0030182biological_processneuron differentiation
B0030286cellular_componentdynein complex
B0030326biological_processembryonic limb morphogenesis
B0030900biological_processforebrain development
B0031514cellular_componentmotile cilium
B0035721biological_processintraciliary retrograde transport
B0045177cellular_componentapical part of cell
B0045505molecular_functiondynein intermediate chain binding
B0045880biological_processpositive regulation of smoothened signaling pathway
B0051959molecular_functiondynein light intermediate chain binding
B0060271biological_processcilium assembly
B0060294biological_processcilium movement involved in cell motility
B0060976biological_processcoronary vasculature development
B0061512biological_processprotein localization to cilium
B0070062cellular_componentextracellular exosome
B0097542cellular_componentciliary tip
B0097729cellular_component9+2 motile cilium
B1905515biological_processnon-motile cilium assembly
C0000242cellular_componentpericentriolar material
C0000922cellular_componentspindle pole
C0005515molecular_functionprotein binding
C0005615cellular_componentextracellular space
C0005737cellular_componentcytoplasm
C0005813cellular_componentcentrosome
C0005856cellular_componentcytoskeleton
C0005868cellular_componentcytoplasmic dynein complex
C0005929cellular_componentcilium
C0030030biological_processcell projection organization
C0031021cellular_componentinterphase microtubule organizing center
C0035721biological_processintraciliary retrograde transport
C0045503molecular_functiondynein light chain binding
C0048704biological_processembryonic skeletal system morphogenesis
C0060271biological_processcilium assembly
C0097542cellular_componentciliary tip
C0097546cellular_componentciliary base
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005813cellular_componentcentrosome
D0005814cellular_componentcentriole
D0005829cellular_componentcytosol
D0005856cellular_componentcytoskeleton
D0005868cellular_componentcytoplasmic dynein complex
D0005929cellular_componentcilium
D0005930cellular_componentaxoneme
D0030175cellular_componentfilopodium
D0035721biological_processintraciliary retrograde transport
D0036064cellular_componentciliary basal body
D0042073biological_processintraciliary transport
D0042995cellular_componentcell projection
D0045503molecular_functiondynein light chain binding
D0045504molecular_functiondynein heavy chain binding
D0060271biological_processcilium assembly
D0097014cellular_componentciliary plasm
D0097542cellular_componentciliary tip
G0003777molecular_functionmicrotubule motor activity
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0005813cellular_componentcentrosome
G0005856cellular_componentcytoskeleton
G0005868cellular_componentcytoplasmic dynein complex
G0005874cellular_componentmicrotubule
G0005929cellular_componentcilium
G0007018biological_processmicrotubule-based movement
G0007632biological_processvisual behavior
G0016020cellular_componentmembrane
G0030286cellular_componentdynein complex
G0045505molecular_functiondynein intermediate chain binding
G0097542cellular_componentciliary tip
H0003777molecular_functionmicrotubule motor activity
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0005813cellular_componentcentrosome
H0005856cellular_componentcytoskeleton
H0005868cellular_componentcytoplasmic dynein complex
H0005874cellular_componentmicrotubule
H0005929cellular_componentcilium
H0007018biological_processmicrotubule-based movement
H0007632biological_processvisual behavior
H0016020cellular_componentmembrane
H0030286cellular_componentdynein complex
H0045505molecular_functiondynein intermediate chain binding
H0097542cellular_componentciliary tip
I0000776cellular_componentkinetochore
I0004857molecular_functionenzyme inhibitor activity
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005694cellular_componentchromosome
I0005737cellular_componentcytoplasm
I0005739cellular_componentmitochondrion
I0005813cellular_componentcentrosome
I0005829cellular_componentcytosol
I0005856cellular_componentcytoskeleton
I0005868cellular_componentcytoplasmic dynein complex
I0005874cellular_componentmicrotubule
I0005886cellular_componentplasma membrane
I0005929cellular_componentcilium
I0006915biological_processapoptotic process
I0006974biological_processDNA damage response
I0007286biological_processspermatid development
I0008180cellular_componentCOP9 signalosome
I0015630cellular_componentmicrotubule cytoskeleton
I0016020cellular_componentmembrane
I0019899molecular_functionenzyme binding
I0021762biological_processsubstantia nigra development
I0030141cellular_componentsecretory granule
I0030235molecular_functionnitric-oxide synthase regulator activity
I0030286cellular_componentdynein complex
I0035721biological_processintraciliary retrograde transport
I0035774biological_processpositive regulation of insulin secretion involved in cellular response to glucose stimulus
I0035861cellular_componentsite of double-strand break
I0036487molecular_functionnitric-oxide synthase inhibitor activity
I0042326biological_processnegative regulation of phosphorylation
I0042802molecular_functionidentical protein binding
I0044458biological_processmotile cilium assembly
I0044877molecular_functionprotein-containing complex binding
I0045019biological_processnegative regulation of nitric oxide biosynthetic process
I0045505molecular_functiondynein intermediate chain binding
I0060703molecular_functiondeoxyribonuclease inhibitor activity
I0070821cellular_componenttertiary granule membrane
I0072686cellular_componentmitotic spindle
I0097110molecular_functionscaffold protein binding
I0097542cellular_componentciliary tip
I0101003cellular_componentficolin-1-rich granule membrane
I0110027biological_processnegative regulation of DNA strand resection involved in replication fork processing
I1904115cellular_componentaxon cytoplasm
J0000776cellular_componentkinetochore
J0004857molecular_functionenzyme inhibitor activity
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005694cellular_componentchromosome
J0005737cellular_componentcytoplasm
J0005739cellular_componentmitochondrion
J0005813cellular_componentcentrosome
J0005829cellular_componentcytosol
J0005856cellular_componentcytoskeleton
J0005868cellular_componentcytoplasmic dynein complex
J0005874cellular_componentmicrotubule
J0005886cellular_componentplasma membrane
J0005929cellular_componentcilium
J0006915biological_processapoptotic process
J0006974biological_processDNA damage response
J0007286biological_processspermatid development
J0008180cellular_componentCOP9 signalosome
J0015630cellular_componentmicrotubule cytoskeleton
J0016020cellular_componentmembrane
J0019899molecular_functionenzyme binding
J0021762biological_processsubstantia nigra development
J0030141cellular_componentsecretory granule
J0030235molecular_functionnitric-oxide synthase regulator activity
J0030286cellular_componentdynein complex
J0035721biological_processintraciliary retrograde transport
J0035774biological_processpositive regulation of insulin secretion involved in cellular response to glucose stimulus
J0035861cellular_componentsite of double-strand break
J0036487molecular_functionnitric-oxide synthase inhibitor activity
J0042326biological_processnegative regulation of phosphorylation
J0042802molecular_functionidentical protein binding
J0044458biological_processmotile cilium assembly
J0044877molecular_functionprotein-containing complex binding
J0045019biological_processnegative regulation of nitric oxide biosynthetic process
J0045505molecular_functiondynein intermediate chain binding
J0060703molecular_functiondeoxyribonuclease inhibitor activity
J0070821cellular_componenttertiary granule membrane
J0072686cellular_componentmitotic spindle
J0097110molecular_functionscaffold protein binding
J0097542cellular_componentciliary tip
J0101003cellular_componentficolin-1-rich granule membrane
J0110027biological_processnegative regulation of DNA strand resection involved in replication fork processing
J1904115cellular_componentaxon cytoplasm
Functional Information from PROSITE/UniProt
site_idPS00374
Number of Residues7
DetailsMGMT Methylated-DNA--protein-cysteine methyltransferase active site. IPCHRVV
ChainResidueDetails
BILE-63-VAL-57

site_idPS01239
Number of Residues15
DetailsDYNEIN_LIGHT_1 Dynein light chain type 1 signature. HcIvGRnFGSyVTHE
ChainResidueDetails
IHIS55-GLU69

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ILYS36
JLYS36

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:15193260, ECO:0000269|PubMed:30464262, ECO:0000269|PubMed:37696958
ChainResidueDetails
ISER88
JSER88
BHIS-177
BHIS-121

site_idSWS_FT_FI3
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ILYS43
BTYR-92
JLYS43
BASN-83
BALA-78
BGLY-55

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER-192

site_idSWS_FT_FI5
Number of Residues5
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
BLEU145
BGLY1689
BGLY1979
BGLY2291
BGLY2655

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 251
ChainResidueDetails
BTYR-92hydrogen bond donor, proton donor
BASN-69electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
BCYS-61hydrogen bond donor, nucleophile, proton donor
BHIS-60hydrogen bond acceptor, hydrogen bond donor, proton acceptor
BGLU-34hydrogen bond acceptor, increase basicity

222036

PDB entries from 2024-07-03

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