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8JC5

Crystal structure of PLEKHM1 RUN domain in complex with GTP-bound Arl8b(Q75L)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0001778biological_processplasma membrane repair
A0002505biological_processantigen processing and presentation of polysaccharide antigen via MHC class II
A0002747biological_processantigen processing and presentation following phagocytosis
A0003924molecular_functionGTPase activity
A0003925molecular_functionG protein activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005764cellular_componentlysosome
A0005765cellular_componentlysosomal membrane
A0005768cellular_componentendosome
A0005819cellular_componentspindle
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0007059biological_processchromosome segregation
A0008089biological_processanterograde axonal transport
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0016197biological_processendosomal transport
A0016787molecular_functionhydrolase activity
A0019003molecular_functionGDP binding
A0030424cellular_componentaxon
A0030496cellular_componentmidbody
A0031901cellular_componentearly endosome membrane
A0031902cellular_componentlate endosome membrane
A0032418biological_processlysosome localization
A0034058biological_processendosomal vesicle fusion
A0034498biological_processearly endosome to Golgi transport
A0042267biological_processnatural killer cell mediated cytotoxicity
A0042995cellular_componentcell projection
A0043014molecular_functionalpha-tubulin binding
A0045202cellular_componentsynapse
A0046754biological_processviral exocytosis
A0048487molecular_functionbeta-tubulin binding
A0051233cellular_componentspindle midzone
A0051301biological_processcell division
A0061909biological_processautophagosome-lysosome fusion
A0070062cellular_componentextracellular exosome
A0090117biological_processendosome to lysosome transport of low-density lipoprotein particle
A0090385biological_processphagosome-lysosome fusion
A0101004cellular_componentcytolytic granule membrane
A1902774biological_processlate endosome to lysosome transport
A1902946biological_processprotein localization to early endosome
A1904115cellular_componentaxon cytoplasm
A1990927biological_processcalcium ion regulated lysosome exocytosis
B0000166molecular_functionnucleotide binding
B0001778biological_processplasma membrane repair
B0002505biological_processantigen processing and presentation of polysaccharide antigen via MHC class II
B0002747biological_processantigen processing and presentation following phagocytosis
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005764cellular_componentlysosome
B0005765cellular_componentlysosomal membrane
B0005768cellular_componentendosome
B0005819cellular_componentspindle
B0005829cellular_componentcytosol
B0005856cellular_componentcytoskeleton
B0007059biological_processchromosome segregation
B0008089biological_processanterograde axonal transport
B0015031biological_processprotein transport
B0016020cellular_componentmembrane
B0016197biological_processendosomal transport
B0016787molecular_functionhydrolase activity
B0019003molecular_functionGDP binding
B0030424cellular_componentaxon
B0030496cellular_componentmidbody
B0031901cellular_componentearly endosome membrane
B0031902cellular_componentlate endosome membrane
B0032418biological_processlysosome localization
B0034058biological_processendosomal vesicle fusion
B0034498biological_processearly endosome to Golgi transport
B0042267biological_processnatural killer cell mediated cytotoxicity
B0042995cellular_componentcell projection
B0043014molecular_functionalpha-tubulin binding
B0045202cellular_componentsynapse
B0046754biological_processviral exocytosis
B0048487molecular_functionbeta-tubulin binding
B0051233cellular_componentspindle midzone
B0051301biological_processcell division
B0061909biological_processautophagosome-lysosome fusion
B0070062cellular_componentextracellular exosome
B0090117biological_processendosome to lysosome transport of low-density lipoprotein particle
B0090385biological_processphagosome-lysosome fusion
B0101004cellular_componentcytolytic granule membrane
B1902774biological_processlate endosome to lysosome transport
B1902946biological_processprotein localization to early endosome
B1904115cellular_componentaxon cytoplasm
B1990927biological_processcalcium ion regulated lysosome exocytosis
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"AUG-2005","submissionDatabase":"PDB data bank","title":"GTP-like conformation of GDP-bound ARL10C GTPase.","authoringGroup":["Structural genomics consortium (SGC)"]}}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P62330","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"27808481","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues284
DetailsDomain: {"description":"RUN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00178","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

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PDB entries from 2025-07-09

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