Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8IP9

Wheat 40S ribosome in complex with a tRNAi

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
IB	0005840	cellular_component	ribosome
IB	1990904	cellular_component	ribonucleoprotein complex
ba	0005840	cellular_component	ribosome
ba	1990904	cellular_component	ribonucleoprotein complex
bb	0003735	molecular_function	structural constituent of ribosome
bb	0005737	cellular_component	cytoplasm
bb	0005829	cellular_component	cytosol
bb	0005840	cellular_component	ribosome
bb	0006412	biological_process	translation
bb	0022627	cellular_component	cytosolic small ribosomal subunit
bb	1990904	cellular_component	ribonucleoprotein complex
ca	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ca	0003735	molecular_function	structural constituent of ribosome
ca	0005840	cellular_component	ribosome
ca	0022627	cellular_component	cytosolic small ribosomal subunit
ca	1990904	cellular_component	ribonucleoprotein complex
cb	0000447	biological_process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cb	0000461	biological_process	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cb	0003735	molecular_function	structural constituent of ribosome
cb	0005840	cellular_component	ribosome
cb	0022627	cellular_component	cytosolic small ribosomal subunit
cb	1990904	cellular_component	ribonucleoprotein complex
da	0003723	molecular_function	RNA binding
da	0003735	molecular_function	structural constituent of ribosome
da	0005737	cellular_component	cytoplasm
da	0022627	cellular_component	cytosolic small ribosomal subunit
db	0003729	molecular_function	mRNA binding
db	0003735	molecular_function	structural constituent of ribosome
db	0005840	cellular_component	ribosome
db	0022627	cellular_component	cytosolic small ribosomal subunit
db	1990904	cellular_component	ribonucleoprotein complex
eb	0003735	molecular_function	structural constituent of ribosome
eb	0005840	cellular_component	ribosome
eb	0019843	molecular_function	rRNA binding
eb	0022627	cellular_component	cytosolic small ribosomal subunit
eb	0042274	biological_process	ribosomal small subunit biogenesis
eb	1990904	cellular_component	ribonucleoprotein complex
fb	0003729	molecular_function	mRNA binding
fb	0003735	molecular_function	structural constituent of ribosome
fb	0005840	cellular_component	ribosome
fb	0006412	biological_process	translation
fb	0022627	cellular_component	cytosolic small ribosomal subunit
fb	1990904	cellular_component	ribonucleoprotein complex
ga	0003735	molecular_function	structural constituent of ribosome
ga	0005840	cellular_component	ribosome
ga	0006412	biological_process	translation
ga	0022627	cellular_component	cytosolic small ribosomal subunit
ga	1990904	cellular_component	ribonucleoprotein complex
gb	0005840	cellular_component	ribosome
gb	1990904	cellular_component	ribonucleoprotein complex
ha	0001934	biological_process	positive regulation of protein phosphorylation
ha	0005080	molecular_function	protein kinase C binding
ha	0005634	cellular_component	nucleus
ha	0005829	cellular_component	cytosol
ha	0006417	biological_process	regulation of translation
ha	0043022	molecular_function	ribosome binding
ha	0072344	biological_process	rescue of stalled ribosome
hb	0005840	cellular_component	ribosome
hb	0006364	biological_process	rRNA processing
hb	0022627	cellular_component	cytosolic small ribosomal subunit
hb	0032040	cellular_component	small-subunit processome
hb	0042274	biological_process	ribosomal small subunit biogenesis
hb	1990904	cellular_component	ribonucleoprotein complex
ia	0003723	molecular_function	RNA binding
ia	0003735	molecular_function	structural constituent of ribosome
ia	0005634	cellular_component	nucleus
ia	0005840	cellular_component	ribosome
ia	0022627	cellular_component	cytosolic small ribosomal subunit
ia	1990904	cellular_component	ribonucleoprotein complex
ib	0003735	molecular_function	structural constituent of ribosome
ib	0005840	cellular_component	ribosome
ib	0022627	cellular_component	cytosolic small ribosomal subunit
ib	1990904	cellular_component	ribonucleoprotein complex
ja	0003723	molecular_function	RNA binding
ja	0003735	molecular_function	structural constituent of ribosome
ja	0005840	cellular_component	ribosome
ja	0006412	biological_process	translation
ja	0019843	molecular_function	rRNA binding
ja	0022627	cellular_component	cytosolic small ribosomal subunit
ja	1990904	cellular_component	ribonucleoprotein complex
ka	0000028	biological_process	ribosomal small subunit assembly
ka	0003729	molecular_function	mRNA binding
ka	0003735	molecular_function	structural constituent of ribosome
ka	0005840	cellular_component	ribosome
ka	0006412	biological_process	translation
ka	0019843	molecular_function	rRNA binding
ka	0022627	cellular_component	cytosolic small ribosomal subunit
ka	1990904	cellular_component	ribonucleoprotein complex
la	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
la	0003723	molecular_function	RNA binding
la	0003735	molecular_function	structural constituent of ribosome
la	0005840	cellular_component	ribosome
la	0022627	cellular_component	cytosolic small ribosomal subunit
la	1990904	cellular_component	ribonucleoprotein complex
ma	0005840	cellular_component	ribosome
ma	1990904	cellular_component	ribonucleoprotein complex
na	0000028	biological_process	ribosomal small subunit assembly
na	0003735	molecular_function	structural constituent of ribosome
na	0005840	cellular_component	ribosome
na	0006412	biological_process	translation
na	0022627	cellular_component	cytosolic small ribosomal subunit
na	1990904	cellular_component	ribonucleoprotein complex
oa	0005829	cellular_component	cytosol
oa	0005840	cellular_component	ribosome
oa	0015935	cellular_component	small ribosomal subunit
oa	1990904	cellular_component	ribonucleoprotein complex
pa	0003735	molecular_function	structural constituent of ribosome
pa	0005730	cellular_component	nucleolus
pa	0005840	cellular_component	ribosome
pa	0022627	cellular_component	cytosolic small ribosomal subunit
pa	0070181	molecular_function	small ribosomal subunit rRNA binding
pa	1990904	cellular_component	ribonucleoprotein complex
qa	0005840	cellular_component	ribosome
qa	1990904	cellular_component	ribonucleoprotein complex
ra	0005840	cellular_component	ribosome
ra	1990904	cellular_component	ribonucleoprotein complex
sa	0000028	biological_process	ribosomal small subunit assembly
sa	0003735	molecular_function	structural constituent of ribosome
sa	0005840	cellular_component	ribosome
sa	0022627	cellular_component	cytosolic small ribosomal subunit
sa	1990904	cellular_component	ribonucleoprotein complex
ta	0003735	molecular_function	structural constituent of ribosome
ta	0005840	cellular_component	ribosome
ta	0022627	cellular_component	cytosolic small ribosomal subunit
ta	1990904	cellular_component	ribonucleoprotein complex
ua	0000028	biological_process	ribosomal small subunit assembly
ua	0003735	molecular_function	structural constituent of ribosome
ua	0005840	cellular_component	ribosome
ua	0022627	cellular_component	cytosolic small ribosomal subunit
ua	0030490	biological_process	maturation of SSU-rRNA
va	0003735	molecular_function	structural constituent of ribosome
va	0005840	cellular_component	ribosome
va	0022627	cellular_component	cytosolic small ribosomal subunit
va	1990904	cellular_component	ribonucleoprotein complex
wa	0002181	biological_process	cytoplasmic translation
wa	0003735	molecular_function	structural constituent of ribosome
wa	0005840	cellular_component	ribosome
wa	0008270	molecular_function	zinc ion binding
wa	0022627	cellular_component	cytosolic small ribosomal subunit
wa	1990904	cellular_component	ribonucleoprotein complex
xa	0000028	biological_process	ribosomal small subunit assembly
xa	0003723	molecular_function	RNA binding
xa	0003735	molecular_function	structural constituent of ribosome
xa	0005840	cellular_component	ribosome
xa	0022627	cellular_component	cytosolic small ribosomal subunit
xa	0046872	molecular_function	metal ion binding
xa	1990904	cellular_component	ribonucleoprotein complex
ya	0003735	molecular_function	structural constituent of ribosome
ya	0005840	cellular_component	ribosome
ya	1990904	cellular_component	ribonucleoprotein complex
za	0000028	biological_process	ribosomal small subunit assembly
za	0002181	biological_process	cytoplasmic translation
za	0003735	molecular_function	structural constituent of ribosome
za	0005737	cellular_component	cytoplasm
za	0005840	cellular_component	ribosome
za	0006412	biological_process	translation
za	0022627	cellular_component	cytosolic small ribosomal subunit
za	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPvPTD

Chain	Residue	Details
na	LEU116-ASP138

site_id	PS00548
Number of Residues	37
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfkdGyMisSgqpVneyIDaavrhvlLrqGvlG

Chain	Residue	Details
ia	ALA147-GLY183

site_id	PS01191
Number of Residues	13
Details	RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkHRVfEvSLaDL

Chain	Residue	Details
bb	LEU61-LEU73

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGktSQiySirqAiAKSL

Chain	Residue	Details
la	GLY77-LEU95

site_id	PS01193
Number of Residues	20
Details	RIBOSOMAL_S8E Ribosomal protein S8e signature. RraTGGkqkaw.RkKrKyELG

Chain	Residue	Details
ca	ARG11-GLY30

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLILtDprtDhqpIkEsalgNIP

Chain	Residue	Details
za	PRO123-PRO147

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. IVSSsrDkSLLVWDL

Chain	Residue	Details
ha	ILE34-LEU48
ha	ALA88-LEU102
ha	ILE130-THR144
ha	ILE180-LEU194
ha	CYS222-LEU236

site_id	PS00628
Number of Residues	20
Details	RIBOSOMAL_S19E Ribosomal protein S19e signature. PphfcksSgaVsRnILQeLQ

Chain	Residue	Details
ra	PRO102-GLN121

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LArRLqtlVFKagmAkSihhARvLI

Chain	Residue	Details
eb	LEU107-ILE131

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLAEFsiS

Chain	Residue	Details
sa	ASN107-SER131

site_id	PS00529
Number of Residues	23
Details	RIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKStGFGlIYDNleaakkfE

Chain	Residue	Details
ba	PHE70-GLU92

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GyvVVTTPnGVLdheeAI

Chain	Residue	Details
va	GLY99-ILE116

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmhgrnnGKKimavrIIkhT

Chain	Residue	Details
ka	GLU66-THR92

site_id	PS00996
Number of Residues	9
Details	RIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA

Chain	Residue	Details
cb	LEU11-ALA19

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHywGvrVRGQ

Chain	Residue	Details
oa	ARG121-GLN134

site_id	PS00578
Number of Residues	12
Details	RIBOSOMAL_S6E Ribosomal protein S6e signature. IMGGcDkqGfPM

Chain	Residue	Details
gb	ILE52-MET63

site_id	PS00528
Number of Residues	15
Details	RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLNaPshWmLdK

Chain	Residue	Details
ja	HIS8-LYS22

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL

Chain	Residue	Details
ua	GLU77-LEU85

site_id	PS01168
Number of Residues	33
Details	RIBOSOMAL_S27E Ribosomal protein S27e signature. KCqgCfnittvFShSqtvvvCpgCQtvLcqPtG

Chain	Residue	Details
xa	LYS38-GLY70

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. IrkHLernRkDkdSkfrLilVesrihrLarY

Chain	Residue	Details
pa	ILE98-TYR128

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDhViIgQcRPLS

Chain	Residue	Details
ib	GLY121-SER133

site_id	PS00948
Number of Residues	14
Details	RIBOSOMAL_S7E Ribosomal protein S7e signature. RLvRELEKKFSgKD

Chain	Residue	Details
hb	ARG79-ASP92

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvVVGDsn.GhVGlGvkcak.EVat.AI

Chain	Residue	Details
fb	GLY103-ILE135

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR

Chain	Residue	Details
ga	LYS59-ARG66

site_id	PS00733
Number of Residues	8
Details	RIBOSOMAL_S26E Ribosomal protein S26e signature. HCVSCAIH

Chain	Residue	Details
db	HIS73-HIS80

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)