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8CVN

Cryo-EM Structure of Human 15-PGDH in Complex with Small Molecule SW209415

Functional Information from GO Data
ChainGOidnamespacecontents
A0001822biological_processkidney development
A0004957molecular_functionprostaglandin E receptor activity
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006629biological_processlipid metabolic process
A0006631biological_processfatty acid metabolic process
A0006693biological_processprostaglandin metabolic process
A0007179biological_processtransforming growth factor beta receptor signaling pathway
A0007565biological_processfemale pregnancy
A0007567biological_processparturition
A0016323cellular_componentbasolateral plasma membrane
A0016404molecular_function15-hydroxyprostaglandin dehydrogenase (NAD+) activity
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0019372biological_processlipoxygenase pathway
A0030728biological_processovulation
A0032355biological_processresponse to estradiol
A0032496biological_processresponse to lipopolysaccharide
A0042802molecular_functionidentical protein binding
A0043065biological_processpositive regulation of apoptotic process
A0045471biological_processresponse to ethanol
A0045786biological_processnegative regulation of cell cycle
A0047034molecular_function15-hydroxyicosatetraenoate dehydrogenase activity
A0051287molecular_functionNAD binding
A0070062cellular_componentextracellular exosome
A0070403molecular_functionNAD+ binding
A0070493biological_processthrombin-activated receptor signaling pathway
A0097070biological_processductus arteriosus closure
A1904707biological_processpositive regulation of vascular associated smooth muscle cell proliferation
A1905344biological_processprostaglandin catabolic process
A1905828biological_processregulation of prostaglandin catabolic process
A2001301biological_processlipoxin biosynthetic process
B0001822biological_processkidney development
B0004957molecular_functionprostaglandin E receptor activity
B0005615cellular_componentextracellular space
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006629biological_processlipid metabolic process
B0006631biological_processfatty acid metabolic process
B0006693biological_processprostaglandin metabolic process
B0007179biological_processtransforming growth factor beta receptor signaling pathway
B0007565biological_processfemale pregnancy
B0007567biological_processparturition
B0016323cellular_componentbasolateral plasma membrane
B0016404molecular_function15-hydroxyprostaglandin dehydrogenase (NAD+) activity
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0019372biological_processlipoxygenase pathway
B0030728biological_processovulation
B0032355biological_processresponse to estradiol
B0032496biological_processresponse to lipopolysaccharide
B0042802molecular_functionidentical protein binding
B0043065biological_processpositive regulation of apoptotic process
B0045471biological_processresponse to ethanol
B0045786biological_processnegative regulation of cell cycle
B0047034molecular_function15-hydroxyicosatetraenoate dehydrogenase activity
B0051287molecular_functionNAD binding
B0070062cellular_componentextracellular exosome
B0070403molecular_functionNAD+ binding
B0070493biological_processthrombin-activated receptor signaling pathway
B0097070biological_processductus arteriosus closure
B1904707biological_processpositive regulation of vascular associated smooth muscle cell proliferation
B1905344biological_processprostaglandin catabolic process
B1905828biological_processregulation of prostaglandin catabolic process
B2001301biological_processlipoxin biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue NAI A 301
ChainResidue
AGLN15
AGLY93
AVAL94
ASER137
ASER138
ATYR151
ALYS155
AGLY184
AVAL186
ATHR188
AILE190
AILE17
ASWL302
AASP36
ATRP37
ACYS63
AASP64
AVAL65
AASN91
AALA92

site_idAC2
Number of Residues9
Detailsbinding site for residue SWL A 302
ChainResidue
AASN95
ASER138
APRO144
AGLN148
ATYR151
APHE185
AMET213
ATYR217
ANAI301

site_idAC3
Number of Residues20
Detailsbinding site for residue NAI B 301
ChainResidue
BGLN15
BILE17
BASP36
BTRP37
BCYS63
BASP64
BVAL65
BASN91
BALA92
BGLY93
BVAL94
BSER137
BSER138
BTYR151
BLYS155
BGLY184
BVAL186
BTHR188
BILE190
BSWL302

site_idAC4
Number of Residues9
Detailsbinding site for residue SWL B 302
ChainResidue
BASN95
BSER138
BPRO144
BGLN148
BTYR151
BPHE185
BMET213
BTYR217
BNAI301

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SlaglmpvaqQpvYCASKHGIvGFTrSAA
ChainResidueDetails
ASER138-ALA166

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues36
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21072165","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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