7ZJ2
Amyloid fibril (in vitro) from full-length hnRNPA1 protein
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003723 | molecular_function | RNA binding |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0003723 | molecular_function | RNA binding |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0003723 | molecular_function | RNA binding |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0003723 | molecular_function | RNA binding |
E | 0003676 | molecular_function | nucleic acid binding |
E | 0003723 | molecular_function | RNA binding |
F | 0003676 | molecular_function | nucleic acid binding |
F | 0003723 | molecular_function | RNA binding |
G | 0003676 | molecular_function | nucleic acid binding |
G | 0003723 | molecular_function | RNA binding |
H | 0003676 | molecular_function | nucleic acid binding |
H | 0003723 | molecular_function | RNA binding |
I | 0003676 | molecular_function | nucleic acid binding |
I | 0003723 | molecular_function | RNA binding |
J | 0003676 | molecular_function | nucleic acid binding |
J | 0003723 | molecular_function | RNA binding |
K | 0003676 | molecular_function | nucleic acid binding |
K | 0003723 | molecular_function | RNA binding |
L | 0003676 | molecular_function | nucleic acid binding |
L | 0003723 | molecular_function | RNA binding |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | MOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378 |
Chain | Residue | Details |
A | MET1 | |
J | MET1 | |
K | MET1 | |
L | MET1 | |
B | MET1 | |
C | MET1 | |
D | MET1 | |
E | MET1 | |
F | MET1 | |
G | MET1 | |
H | MET1 | |
I | MET1 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER2 | |
J | SER2 | |
K | SER2 | |
L | SER2 | |
B | SER2 | |
C | SER2 | |
D | SER2 | |
E | SER2 | |
F | SER2 | |
G | SER2 | |
H | SER2 | |
I | SER2 |
site_id | SWS_FT_FI3 |
Number of Residues | 12 |
Details | MOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS3 | |
J | LYS3 | |
K | LYS3 | |
L | LYS3 | |
B | LYS3 | |
C | LYS3 | |
D | LYS3 | |
E | LYS3 | |
F | LYS3 | |
G | LYS3 | |
H | LYS3 | |
I | LYS3 |
site_id | SWS_FT_FI4 |
Number of Residues | 12 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER4 | |
J | SER4 | |
K | SER4 | |
L | SER4 | |
B | SER4 | |
C | SER4 | |
D | SER4 | |
E | SER4 | |
F | SER4 | |
G | SER4 | |
H | SER4 | |
I | SER4 |
site_id | SWS_FT_FI5 |
Number of Residues | 12 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER6 | |
J | SER6 | |
K | SER6 | |
L | SER6 | |
B | SER6 | |
C | SER6 | |
D | SER6 | |
E | SER6 | |
F | SER6 | |
G | SER6 | |
H | SER6 | |
I | SER6 |
site_id | SWS_FT_FI6 |
Number of Residues | 12 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P49312 |
Chain | Residue | Details |
A | SER22 | |
J | SER22 | |
K | SER22 | |
L | SER22 | |
B | SER22 | |
C | SER22 | |
D | SER22 | |
E | SER22 | |
F | SER22 | |
G | SER22 | |
H | SER22 | |
I | SER22 |
site_id | SWS_FT_FI7 |
Number of Residues | 12 |
Details | MOD_RES: Phosphoserine; by MKNK2 => ECO:0000269|PubMed:16111636 |
Chain | Residue | Details |
A | SER192 | |
J | SER192 | |
K | SER192 | |
L | SER192 | |
B | SER192 | |
C | SER192 | |
D | SER192 | |
E | SER192 | |
F | SER192 | |
G | SER192 | |
H | SER192 | |
I | SER192 |
site_id | SWS_FT_FI8 |
Number of Residues | 12 |
Details | MOD_RES: Omega-N-methylarginine; alternate => ECO:0000250|UniProtKB:P49312 |
Chain | Residue | Details |
A | ARG194 | |
J | ARG194 | |
K | ARG194 | |
L | ARG194 | |
B | ARG194 | |
C | ARG194 | |
D | ARG194 | |
E | ARG194 | |
F | ARG194 | |
G | ARG194 | |
H | ARG194 | |
I | ARG194 |
site_id | SWS_FT_FI9 |
Number of Residues | 12 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:21406692 |
Chain | Residue | Details |
A | SER199 | |
J | SER199 | |
K | SER199 | |
L | SER199 | |
B | SER199 | |
C | SER199 | |
D | SER199 | |
E | SER199 | |
F | SER199 | |
G | SER199 | |
H | SER199 | |
I | SER199 |
site_id | SWS_FT_FI10 |
Number of Residues | 24 |
Details | MOD_RES: Omega-N-methylarginine; alternate => ECO:0000269|Ref.9, ECO:0007744|PubMed:24129315 |
Chain | Residue | Details |
A | ARG206 | |
E | ARG225 | |
F | ARG206 | |
F | ARG225 | |
G | ARG206 | |
G | ARG225 | |
H | ARG206 | |
H | ARG225 | |
I | ARG206 | |
I | ARG225 | |
J | ARG206 | |
A | ARG225 | |
J | ARG225 | |
K | ARG206 | |
K | ARG225 | |
L | ARG206 | |
L | ARG225 | |
B | ARG206 | |
B | ARG225 | |
C | ARG206 | |
C | ARG225 | |
D | ARG206 | |
D | ARG225 | |
E | ARG206 |
site_id | SWS_FT_FI11 |
Number of Residues | 24 |
Details | MOD_RES: Omega-N-methylarginine; alternate => ECO:0007744|PubMed:24129315 |
Chain | Residue | Details |
A | ARG218 | |
E | ARG232 | |
F | ARG218 | |
F | ARG232 | |
G | ARG218 | |
G | ARG232 | |
H | ARG218 | |
H | ARG232 | |
I | ARG218 | |
I | ARG232 | |
J | ARG218 | |
A | ARG232 | |
J | ARG232 | |
K | ARG218 | |
K | ARG232 | |
L | ARG218 | |
L | ARG232 | |
B | ARG218 | |
B | ARG232 | |
C | ARG218 | |
C | ARG232 | |
D | ARG218 | |
D | ARG232 | |
E | ARG218 |
site_id | SWS_FT_FI12 |
Number of Residues | 12 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
A | LYS3 | |
J | LYS3 | |
K | LYS3 | |
L | LYS3 | |
B | LYS3 | |
C | LYS3 | |
D | LYS3 | |
E | LYS3 | |
F | LYS3 | |
G | LYS3 | |
H | LYS3 | |
I | LYS3 |
site_id | SWS_FT_FI13 |
Number of Residues | 48 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
C | LYS78 | |
C | LYS179 | |
C | LYS183 | |
D | LYS78 | |
D | LYS179 | |
D | LYS183 | |
E | LYS78 | |
E | LYS179 | |
A | LYS78 | |
E | LYS183 | |
F | LYS78 | |
F | LYS179 | |
F | LYS183 | |
G | LYS78 | |
G | LYS179 | |
G | LYS183 | |
A | LYS179 | |
H | LYS78 | |
H | LYS179 | |
H | LYS183 | |
I | LYS78 | |
I | LYS179 | |
I | LYS183 | |
J | LYS78 | |
J | LYS179 | |
A | LYS183 | |
J | LYS183 | |
K | LYS78 | |
K | LYS179 | |
K | LYS183 | |
L | LYS78 | |
L | LYS179 | |
L | LYS183 | |
B | LYS78 | |
B | LYS179 | |
B | LYS183 |
site_id | SWS_FT_FI14 |
Number of Residues | 12 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
A | LYS8 | |
J | LYS8 | |
K | LYS8 | |
L | LYS8 | |
B | LYS8 | |
C | LYS8 | |
D | LYS8 | |
E | LYS8 | |
F | LYS8 | |
G | LYS8 | |
H | LYS8 | |
I | LYS8 |
site_id | SWS_FT_FI15 |
Number of Residues | 12 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000269|PubMed:15161980 |
Chain | Residue | Details |
A | LYS113 | |
J | LYS113 | |
K | LYS113 | |
L | LYS113 | |
B | LYS113 | |
C | LYS113 | |
D | LYS113 | |
E | LYS113 | |
F | LYS113 | |
G | LYS113 | |
H | LYS113 | |
I | LYS113 |