| Chain | GOid | namespace | contents |
| A | 0000086 | biological_process | G2/M transition of mitotic cell cycle |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0000785 | cellular_component | chromatin |
| A | 0003713 | molecular_function | transcription coactivator activity |
| A | 0003714 | molecular_function | transcription corepressor activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0006303 | biological_process | double-strand break repair via nonhomologous end joining |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006334 | biological_process | nucleosome assembly |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| A | 0016479 | biological_process | negative regulation of transcription by RNA polymerase I |
| A | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| A | 0032221 | cellular_component | Rpd3S complex |
| A | 0033698 | cellular_component | Rpd3L complex |
| A | 0034605 | biological_process | cellular response to heat |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0044804 | biological_process | nucleophagy |
| A | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| A | 0051301 | biological_process | cell division |
| A | 0051321 | biological_process | meiotic cell cycle |
| A | 0061186 | biological_process | negative regulation of silent mating-type cassette heterochromatin formation |
| A | 0061188 | biological_process | negative regulation of rDNA heterochromatin formation |
| A | 0070210 | cellular_component | Rpd3L-Expanded complex |
| A | 0070550 | biological_process | rDNA chromatin condensation |
| A | 0070822 | cellular_component | Sin3-type complex |
| B | 0000082 | biological_process | G1/S transition of mitotic cell cycle |
| B | 0000086 | biological_process | G2/M transition of mitotic cell cycle |
| B | 0000118 | cellular_component | histone deacetylase complex |
| B | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| B | 0003713 | molecular_function | transcription coactivator activity |
| B | 0003714 | molecular_function | transcription corepressor activity |
| B | 0004407 | molecular_function | histone deacetylase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006325 | biological_process | chromatin organization |
| B | 0006334 | biological_process | nucleosome assembly |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| B | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| B | 0006979 | biological_process | response to oxidative stress |
| B | 0006995 | biological_process | cellular response to nitrogen starvation |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0016239 | biological_process | positive regulation of macroautophagy |
| B | 0016479 | biological_process | negative regulation of transcription by RNA polymerase I |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| B | 0031507 | biological_process | heterochromatin formation |
| B | 0032221 | cellular_component | Rpd3S complex |
| B | 0033698 | cellular_component | Rpd3L complex |
| B | 0034399 | cellular_component | nuclear periphery |
| B | 0034503 | biological_process | protein localization to nucleolar rDNA repeats |
| B | 0034605 | biological_process | cellular response to heat |
| B | 0044804 | biological_process | nucleophagy |
| B | 0045128 | biological_process | negative regulation of reciprocal meiotic recombination |
| B | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| B | 0051321 | biological_process | meiotic cell cycle |
| B | 0061186 | biological_process | negative regulation of silent mating-type cassette heterochromatin formation |
| B | 0061188 | biological_process | negative regulation of rDNA heterochromatin formation |
| B | 0070210 | cellular_component | Rpd3L-Expanded complex |
| B | 0070211 | cellular_component | Snt2C complex |
| B | 0070550 | biological_process | rDNA chromatin condensation |
| B | 0070822 | cellular_component | Sin3-type complex |
| C | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| C | 0000123 | cellular_component | histone acetyltransferase complex |
| C | 0005515 | molecular_function | protein binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0006281 | biological_process | DNA repair |
| C | 0006325 | biological_process | chromatin organization |
| C | 0006334 | biological_process | nucleosome assembly |
| C | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| C | 0006337 | biological_process | nucleosome disassembly |
| C | 0006338 | biological_process | chromatin remodeling |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| C | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| C | 0009889 | biological_process | regulation of biosynthetic process |
| C | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| C | 0032221 | cellular_component | Rpd3S complex |
| C | 0032968 | biological_process | positive regulation of transcription elongation by RNA polymerase II |
| C | 0035064 | molecular_function | methylated histone binding |
| C | 0035267 | cellular_component | NuA4 histone acetyltransferase complex |
| C | 0043487 | biological_process | regulation of RNA stability |
| C | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| C | 0060195 | biological_process | negative regulation of antisense RNA transcription |
| C | 1990453 | cellular_component | nucleosome disassembly/reassembly complex |
| D | 0000118 | cellular_component | histone deacetylase complex |
| D | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| D | 0005634 | cellular_component | nucleus |
| D | 0006325 | biological_process | chromatin organization |
| D | 0006334 | biological_process | nucleosome assembly |
| D | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| D | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| D | 0008270 | molecular_function | zinc ion binding |
| D | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| D | 0032221 | cellular_component | Rpd3S complex |
| D | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0060195 | biological_process | negative regulation of antisense RNA transcription |
| E | 0000118 | cellular_component | histone deacetylase complex |
| E | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| E | 0005634 | cellular_component | nucleus |
| E | 0006325 | biological_process | chromatin organization |
| E | 0006334 | biological_process | nucleosome assembly |
| E | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| E | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| E | 0008270 | molecular_function | zinc ion binding |
| E | 0030174 | biological_process | regulation of DNA-templated DNA replication initiation |
| E | 0032221 | cellular_component | Rpd3S complex |
| E | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| E | 0046872 | molecular_function | metal ion binding |
| E | 0060195 | biological_process | negative regulation of antisense RNA transcription |
