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7V0E

Crystal structure of the macro-oligomeric form of DNMT3B methyltransferase domain.

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
B0008168molecular_functionmethyltransferase activity
C0008168molecular_functionmethyltransferase activity
D0008168molecular_functionmethyltransferase activity
E0008168molecular_functionmethyltransferase activity
F0008168molecular_functionmethyltransferase activity
G0008168molecular_functionmethyltransferase activity
H0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue SAH A 901
ChainResidue
APHE581
AVAL628
AARG832
ASER833
ATRP834
AASP582
AGLY583
AILE584
ATHR586
ASER604
AGLU605
AVAL606
AASP627

site_idAC2
Number of Residues13
Detailsbinding site for residue SAH B 901
ChainResidue
BPHE581
BASP582
BGLY583
BILE584
BTHR586
BSER604
BGLU605
BVAL606
BASP627
BVAL628
BARG832
BSER833
BTRP834

site_idAC3
Number of Residues13
Detailsbinding site for residue SAH C 901
ChainResidue
CPHE581
CGLY583
CILE584
CTHR586
CSER604
CGLU605
CVAL606
CASP627
CVAL628
CLEU671
CARG832
CSER833
CTRP834

site_idAC4
Number of Residues14
Detailsbinding site for residue SAH D 901
ChainResidue
DPHE581
DASP582
DGLY583
DILE584
DTHR586
DSER604
DGLU605
DVAL606
DASP627
DVAL628
DGLY648
DARG832
DSER833
DTRP834

site_idAC5
Number of Residues15
Detailsbinding site for residue SAH E 901
ChainResidue
EPHE581
EASP582
EGLY583
EILE584
ETHR586
ESER604
EGLU605
EVAL606
ECYS607
EASP627
EVAL628
ELEU671
EARG832
ESER833
ETRP834

site_idAC6
Number of Residues15
Detailsbinding site for residue SAH F 901
ChainResidue
FPHE581
FASP582
FGLY583
FILE584
FTHR586
FSER604
FGLU605
FVAL606
FASP627
FVAL628
FLEU671
FARG832
FSER833
FTRP834
FHOH1003

site_idAC7
Number of Residues13
Detailsbinding site for residue SAH G 901
ChainResidue
GPHE581
GASP582
GGLY583
GILE584
GTHR586
GSER604
GGLU605
GVAL606
GASP627
GVAL628
GARG832
GSER833
GTRP834

site_idAC8
Number of Residues12
Detailsbinding site for residue SAH H 901
ChainResidue
HTHR586
HGLU605
HVAL606
HASP627
HVAL628
HLEU671
HARG832
HSER833
HTRP834
HPHE581
HGLY583
HILE584

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DlVigGsPCnDLS
ChainResidueDetails
AASP643-SER655

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01016","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10018","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues72
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q9Y6K1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues16
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

244693

PDB entries from 2025-11-12

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