7LRD
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004540 | molecular_function | RNA nuclease activity |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0016075 | biological_process | rRNA catabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0043022 | molecular_function | ribosome binding |
A | 0097190 | biological_process | apoptotic signaling pathway |
B | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
B | 0007165 | biological_process | signal transduction |
B | 0008081 | molecular_function | phosphoric diester hydrolase activity |
C | 0004540 | molecular_function | RNA nuclease activity |
C | 0005515 | molecular_function | protein binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0016075 | biological_process | rRNA catabolic process |
C | 0016787 | molecular_function | hydrolase activity |
C | 0043022 | molecular_function | ribosome binding |
C | 0097190 | biological_process | apoptotic signaling pathway |
D | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
D | 0007165 | biological_process | signal transduction |
D | 0008081 | molecular_function | phosphoric diester hydrolase activity |
Functional Information from PROSITE/UniProt
site_id | PS00126 |
Number of Residues | 12 |
Details | PDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDYdHpGrtNaF |
Chain | Residue | Details |
B | HIS836-PHE847 |
site_id | PS00216 |
Number of Residues | 17 |
Details | SUGAR_TRANSPORT_1 Sugar transport proteins signature 1. IFDLVENIGRKcgril.S |
Chain | Residue | Details |
B | ILE696-SER712 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton donor => ECO:0000250|UniProtKB:O76083 |
Chain | Residue | Details |
B | HIS752 | |
D | HIS752 | |
C | SER368 | |
C | SER573 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:34272366, ECO:0007744|PDB:7L29 |
Chain | Residue | Details |
B | HIS752 | |
B | GLN1001 | |
D | HIS752 | |
D | GLN1001 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000269|PubMed:34272366, ECO:0007744|PDB:7KWE, ECO:0007744|PDB:7L27, ECO:0007744|PDB:7L28, ECO:0007744|PDB:7L29 |
Chain | Residue | Details |
B | HIS756 | |
B | HIS836 | |
B | ASP837 | |
B | ASP950 | |
D | HIS756 | |
D | HIS836 | |
D | ASP837 | |
D | ASP950 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9Z0X4 |
Chain | Residue | Details |
B | SER1033 | |
D | SER1033 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q9Z0X4 |
Chain | Residue | Details |
B | THR1036 | |
D | THR1036 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
B | LYS1120 | |
D | LYS1120 |