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7LEP

The composite LBD-TMD structure combined from all hippocampal AMPAR subtypes at 3.25 Angstrom resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005216molecular_functionmonoatomic ion channel activity
A0006811biological_processmonoatomic ion transport
A0015276molecular_functionligand-gated monoatomic ion channel activity
A0016020cellular_componentmembrane
A0038023molecular_functionsignaling receptor activity
B0005216molecular_functionmonoatomic ion channel activity
B0006811biological_processmonoatomic ion transport
B0015276molecular_functionligand-gated monoatomic ion channel activity
B0016020cellular_componentmembrane
B0038023molecular_functionsignaling receptor activity
C0005216molecular_functionmonoatomic ion channel activity
C0006811biological_processmonoatomic ion transport
C0015276molecular_functionligand-gated monoatomic ion channel activity
C0016020cellular_componentmembrane
C0038023molecular_functionsignaling receptor activity
D0005216molecular_functionmonoatomic ion channel activity
D0006811biological_processmonoatomic ion transport
D0015276molecular_functionligand-gated monoatomic ion channel activity
D0016020cellular_componentmembrane
D0038023molecular_functionsignaling receptor activity
E0005515molecular_functionprotein binding
E0005783cellular_componentendoplasmic reticulum
E0005789cellular_componentendoplasmic reticulum membrane
E0005886cellular_componentplasma membrane
E0014069cellular_componentpostsynaptic density
E0016192biological_processvesicle-mediated transport
E0016247molecular_functionchannel regulator activity
E0030425cellular_componentdendrite
E0032281cellular_componentAMPA glutamate receptor complex
E0035249biological_processsynaptic transmission, glutamatergic
E0042391biological_processregulation of membrane potential
E0042995cellular_componentcell projection
E0043197cellular_componentdendritic spine
E0043198cellular_componentdendritic shaft
E0045202cellular_componentsynapse
E0045211cellular_componentpostsynaptic membrane
E0051668biological_processlocalization within membrane
E2000311biological_processregulation of AMPA receptor activity
F0005515molecular_functionprotein binding
F0005783cellular_componentendoplasmic reticulum
F0005789cellular_componentendoplasmic reticulum membrane
F0005886cellular_componentplasma membrane
F0014069cellular_componentpostsynaptic density
F0016192biological_processvesicle-mediated transport
F0016247molecular_functionchannel regulator activity
F0030425cellular_componentdendrite
F0032281cellular_componentAMPA glutamate receptor complex
F0035249biological_processsynaptic transmission, glutamatergic
F0042391biological_processregulation of membrane potential
F0042995cellular_componentcell projection
F0043197cellular_componentdendritic spine
F0043198cellular_componentdendritic shaft
F0045202cellular_componentsynapse
F0045211cellular_componentpostsynaptic membrane
F0051668biological_processlocalization within membrane
F2000311biological_processregulation of AMPA receptor activity
G0006816biological_processcalcium ion transport
G0016020cellular_componentmembrane
H0006816biological_processcalcium ion transport
H0016020cellular_componentmembrane
Functional Information from PROSITE/UniProt
site_idPS01340
Number of Residues15
DetailsCORNICHON Cornichon family signature. IafdELrtDFkNPID
ChainResidueDetails
EILE29-ASP43

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues80
DetailsTRANSMEM: Helical => ECO:0000250
ChainResidueDetails
BTYR523-VAL543
BLEU596-TYR616
DTYR523-VAL543
DLEU596-TYR616
HVAL19-ILE39
HSER127-ALA147
HILE157-ILE177
HPHE207-ILE227

site_idSWS_FT_FI2
Number of Residues62
DetailsTOPO_DOM: Cytoplasmic => ECO:0000250
ChainResidueDetails
BSER544-GLU570
BASP590-SER595
DSER544-GLU570
DASP590-SER595

site_idSWS_FT_FI3
Number of Residues30
DetailsINTRAMEM: Helical; Pore-forming => ECO:0000250
ChainResidueDetails
BPHE571-ARG586
DPHE571-ARG586

site_idSWS_FT_FI4
Number of Residues4
DetailsINTRAMEM: INTRAMEM => ECO:0000250
ChainResidueDetails
BGLN587-CYS589
DGLN587-CYS589

site_idSWS_FT_FI5
Number of Residues348
DetailsTOPO_DOM: Extracellular => ECO:0000250
ChainResidueDetails
BTHR617-ASN791
DTHR617-ASN791

site_idSWS_FT_FI6
Number of Residues40
DetailsTRANSMEM: Helical; Name=M4 => ECO:0000250
ChainResidueDetails
BVAL792-ILE812
DVAL792-ILE812

site_idSWS_FT_FI7
Number of Residues12
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P42262
ChainResidueDetails
BPRO478
DSER654
DTHR655
DGLU705
BTHR480
BARG485
BSER654
BTHR655
BGLU705
DPRO478
DTHR480
DARG485

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKC => ECO:0000250|UniProtKB:P19491
ChainResidueDetails
BSER662
DSER662

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKG => ECO:0000250|UniProtKB:P19491
ChainResidueDetails
BSER696
DSER696

site_idSWS_FT_FI10
Number of Residues4
DetailsLIPID: S-palmitoyl cysteine => ECO:0000269|PubMed:16129400
ChainResidueDetails
BCYS589
BCYS815
DCYS589
DCYS815

224572

PDB entries from 2024-09-04

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