7EA9
Crystal Structure of human lysyl-tRNA synthetase Y145H mutant
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| A | 0004824 | molecular_function | lysine-tRNA ligase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| A | 0006430 | biological_process | lysyl-tRNA aminoacylation |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003676 | molecular_function | nucleic acid binding |
| B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| B | 0004824 | molecular_function | lysine-tRNA ligase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| B | 0006430 | biological_process | lysyl-tRNA aminoacylation |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0003676 | molecular_function | nucleic acid binding |
| C | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| C | 0004824 | molecular_function | lysine-tRNA ligase activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| C | 0006430 | biological_process | lysyl-tRNA aminoacylation |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0003676 | molecular_function | nucleic acid binding |
| D | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| D | 0004824 | molecular_function | lysine-tRNA ligase activity |
| D | 0005524 | molecular_function | ATP binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| D | 0006430 | biological_process | lysyl-tRNA aminoacylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 22 |
| Details | binding site for residue KAA A 601 |
| Chain | Residue |
| A | GLY277 |
| A | GLU339 |
| A | TYR341 |
| A | GLU494 |
| A | ILE495 |
| A | ASN497 |
| A | TYR499 |
| A | GLU501 |
| A | GLY546 |
| A | GLY550 |
| A | ARG553 |
| A | GLU301 |
| A | ILE564 |
| A | GOL602 |
| A | HOH796 |
| A | ARG323 |
| A | GLU325 |
| A | THR330 |
| A | HIS331 |
| A | ASN332 |
| A | PHE335 |
| A | THR337 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 602 |
| Chain | Residue |
| A | HIS331 |
| A | GLU494 |
| A | ARG553 |
| A | KAA601 |
| site_id | AC3 |
| Number of Residues | 22 |
| Details | binding site for residue KAA B 601 |
| Chain | Residue |
| B | GLY277 |
| B | GLU301 |
| B | ARG323 |
| B | GLU325 |
| B | THR330 |
| B | HIS331 |
| B | ASN332 |
| B | PHE335 |
| B | THR337 |
| B | GLU339 |
| B | TYR341 |
| B | GLU494 |
| B | ILE495 |
| B | ASN497 |
| B | TYR499 |
| B | GLU501 |
| B | GLY546 |
| B | GLY550 |
| B | ARG553 |
| B | ILE564 |
| B | GOL602 |
| B | HOH774 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 602 |
| Chain | Residue |
| B | ARG323 |
| B | GLU325 |
| B | HIS331 |
| B | ARG553 |
| B | KAA601 |
| site_id | AC5 |
| Number of Residues | 22 |
| Details | binding site for residue KAA C 601 |
| Chain | Residue |
| C | GLY277 |
| C | GLU301 |
| C | ARG323 |
| C | GLU325 |
| C | THR330 |
| C | HIS331 |
| C | ASN332 |
| C | PHE335 |
| C | THR337 |
| C | GLU339 |
| C | TYR341 |
| C | GLU494 |
| C | ILE495 |
| C | ASN497 |
| C | TYR499 |
| C | GLU501 |
| C | GLY546 |
| C | GLY550 |
| C | ARG553 |
| C | ILE564 |
| C | GOL602 |
| C | HOH763 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue GOL C 602 |
| Chain | Residue |
| C | ARG323 |
| C | GLU325 |
| C | HIS331 |
| C | GLU494 |
| C | KAA601 |
| site_id | AC7 |
| Number of Residues | 23 |
| Details | binding site for residue KAA D 601 |
| Chain | Residue |
| D | ARG553 |
| D | ILE564 |
| D | GOL602 |
| D | HOH788 |
| D | GLY277 |
| D | GLU301 |
| D | ARG323 |
| D | GLU325 |
| D | THR330 |
| D | HIS331 |
| D | ASN332 |
| D | PHE335 |
| D | THR337 |
| D | GLU339 |
| D | TYR341 |
| D | GLU494 |
| D | ILE495 |
| D | ASN497 |
| D | TYR499 |
| D | GLU501 |
| D | GLY546 |
| D | GLY548 |
| D | GLY550 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue GOL D 602 |
| Chain | Residue |
| D | GLU325 |
| D | HIS331 |
| D | ARG553 |
| D | KAA601 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:18272479, ECO:0000269|PubMed:26074468 |
| Chain | Residue | Details |
| A | GLY277 | |
| B | GLY277 | |
| C | GLY277 | |
| D | GLY277 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 20 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:18272479, ECO:0000269|PubMed:23159739, ECO:0000269|PubMed:26074468 |
| Chain | Residue | Details |
| A | GLU301 | |
| B | GLU501 | |
| C | GLU301 | |
| C | GLU339 | |
| C | TYR341 | |
| C | ASN497 | |
| C | GLU501 | |
| D | GLU301 | |
| D | GLU339 | |
| D | TYR341 | |
| D | ASN497 | |
| A | GLU339 | |
| D | GLU501 | |
| A | TYR341 | |
| A | ASN497 | |
| A | GLU501 | |
| B | GLU301 | |
| B | GLU339 | |
| B | TYR341 | |
| B | ASN497 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 16 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:18272479 |
| Chain | Residue | Details |
| A | ARG323 | |
| C | HIS331 | |
| C | GLU494 | |
| C | GLY550 | |
| D | ARG323 | |
| D | HIS331 | |
| D | GLU494 | |
| D | GLY550 | |
| A | HIS331 | |
| A | GLU494 | |
| A | GLY550 | |
| B | ARG323 | |
| B | HIS331 | |
| B | GLU494 | |
| B | GLY550 | |
| C | ARG323 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
| Chain | Residue | Details |
| A | LYS88 | |
| A | LYS141 | |
| B | LYS88 | |
| B | LYS141 | |
| C | LYS88 | |
| C | LYS141 | |
| D | LYS88 | |
| D | LYS141 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:19524539 |
| Chain | Residue | Details |
| A | SER207 | |
| B | SER207 | |
| C | SER207 | |
| D | SER207 |
