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7BJ1

Crystal structure of SMYD3 with diperodon S enantiomer bound to allosteric site

Replaces:  6Z2R
Functional Information from GO Data
ChainGOidnamespacecontents
A0000978molecular_functionRNA polymerase II cis-regulatory region sequence-specific DNA binding
A0000993molecular_functionRNA polymerase II complex binding
A0001162molecular_functionRNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006325biological_processchromatin organization
A0006334biological_processnucleosome assembly
A0008168molecular_functionmethyltransferase activity
A0014904biological_processmyotube cell development
A0032259biological_processmethylation
A0042054molecular_functionhistone methyltransferase activity
A0045184biological_processestablishment of protein localization
A0045944biological_processpositive regulation of transcription by RNA polymerase II
A0046872molecular_functionmetal ion binding
A0071549biological_processcellular response to dexamethasone stimulus
A0140939molecular_functionhistone H4 methyltransferase activity
A0140954molecular_functionhistone H3K36 dimethyltransferase activity
A0140999molecular_functionhistone H3K4 trimethyltransferase activity
Functional Information from PROSITE/UniProt
site_idPS01360
Number of Residues39
DetailsZF_MYND_1 Zinc finger MYND-type signature. Cdr..Cllgkeklmr........CsqCrvakYCsakCqkkawpd..Hkre.C
ChainResidueDetails
ACYS49-CYS87

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues38
DetailsZN_FING: MYND-type => ECO:0000255|PROSITE-ProRule:PRU00134
ChainResidueDetails
ACYS49-CYS87

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|Ref.12
ChainResidueDetails
AARG14
AASN205

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00134
ChainResidueDetails
ACYS49
ACYS52
ACYS62
ACYS65
ACYS71
ACYS75
AHIS83
ACYS87

site_idSWS_FT_FI4
Number of Residues5
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00190, ECO:0000269|Ref.12
ChainResidueDetails
ATYR124
AASN132
AASN181
ATYR239
APHE259

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
AMET1

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ATHR22

226707

PDB entries from 2024-10-30

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