| Chain | GOid | namespace | contents |
| A | 0000785 | cellular_component | chromatin |
| A | 0003677 | molecular_function | DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006281 | biological_process | DNA repair |
| A | 0016020 | cellular_component | membrane |
| A | 0031398 | biological_process | positive regulation of protein ubiquitination |
| A | 0036297 | biological_process | interstrand cross-link repair |
| A | 0070182 | molecular_function | DNA polymerase binding |
| A | 1990391 | cellular_component | DNA repair complex |
| B | 0000785 | cellular_component | chromatin |
| B | 0000793 | cellular_component | condensed chromosome |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005730 | cellular_component | nucleolus |
| B | 0005829 | cellular_component | cytosol |
| B | 0006281 | biological_process | DNA repair |
| B | 0006974 | biological_process | DNA damage response |
| B | 0007129 | biological_process | homologous chromosome pairing at meiosis |
| B | 0007276 | biological_process | gamete generation |
| B | 0010332 | biological_process | response to gamma radiation |
| B | 0016604 | cellular_component | nuclear body |
| B | 0031573 | biological_process | mitotic intra-S DNA damage checkpoint signaling |
| B | 0034599 | biological_process | cellular response to oxidative stress |
| B | 0036297 | biological_process | interstrand cross-link repair |
| B | 0045589 | biological_process | regulation of regulatory T cell differentiation |
| B | 0048854 | biological_process | brain morphogenesis |
| B | 0050727 | biological_process | regulation of inflammatory response |
| B | 0070182 | molecular_function | DNA polymerase binding |
| B | 0097150 | biological_process | neuronal stem cell population maintenance |
| B | 1990391 | cellular_component | DNA repair complex |
| B | 1990918 | biological_process | double-strand break repair involved in meiotic recombination |
| B | 2000348 | biological_process | regulation of CD40 signaling pathway |
| D | 0001501 | biological_process | skeletal system development |
| D | 0004197 | molecular_function | cysteine-type endopeptidase activity |
| D | 0004843 | molecular_function | cysteine-type deubiquitinase activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005654 | cellular_component | nucleoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0006281 | biological_process | DNA repair |
| D | 0006282 | biological_process | regulation of DNA repair |
| D | 0006508 | biological_process | proteolysis |
| D | 0008233 | molecular_function | peptidase activity |
| D | 0008234 | molecular_function | cysteine-type peptidase activity |
| D | 0009411 | biological_process | response to UV |
| D | 0016579 | biological_process | protein deubiquitination |
| D | 0035520 | biological_process | monoubiquitinated protein deubiquitination |
| D | 0046427 | biological_process | positive regulation of receptor signaling pathway via JAK-STAT |
| D | 1904333 | biological_process | positive regulation of error-prone translesion synthesis |
| E | 0000724 | biological_process | double-strand break repair via homologous recombination |
| E | 0003677 | molecular_function | DNA binding |
| E | 0003690 | molecular_function | double-stranded DNA binding |
| E | 0003697 | molecular_function | single-stranded DNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005634 | cellular_component | nucleus |
| E | 0005654 | cellular_component | nucleoplasm |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0005764 | cellular_component | lysosome |
| E | 0005768 | cellular_component | endosome |
| E | 0005770 | cellular_component | late endosome |
| E | 0005829 | cellular_component | cytosol |
| E | 0006281 | biological_process | DNA repair |
| E | 0006974 | biological_process | DNA damage response |
| E | 0007283 | biological_process | spermatogenesis |
| E | 0007338 | biological_process | single fertilization |
| E | 0008584 | biological_process | male gonad development |
| E | 0035264 | biological_process | multicellular organism growth |
| E | 0035800 | molecular_function | deubiquitinase activator activity |
| E | 0043130 | molecular_function | ubiquitin binding |
| E | 0043231 | cellular_component | intracellular membrane-bounded organelle |
| E | 0043588 | biological_process | skin development |
| E | 0046427 | biological_process | positive regulation of receptor signaling pathway via JAK-STAT |
| E | 0048568 | biological_process | embryonic organ development |
| E | 0048705 | biological_process | skeletal system morphogenesis |
| E | 0048872 | biological_process | homeostasis of number of cells |
| E | 0050679 | biological_process | positive regulation of epithelial cell proliferation |
| E | 0072520 | biological_process | seminiferous tubule development |
| E | 1902525 | biological_process | regulation of protein monoubiquitination |
| E | 1905168 | biological_process | positive regulation of double-strand break repair via homologous recombination |
