6YOQ

Crystal structure of YTHDC1 with compound VVR_DC1_002

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
B	0003723	molecular_function	RNA binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	binding site for residue P5H A 601

Chain	Residue
A	LYS361
A	ASP476
A	SO4604
A	HOH714
A	HOH731
A	HOH820
A	HOH862
A	ASN363
A	ASN367
A	TRP377
A	SER378
A	LEU380
A	TRP428
A	PRO431
A	MET434

---

site_id	AC2
Number of Residues	10
Details	binding site for residue SO4 A 602

Chain	Residue
A	GLY344
A	THR345
A	SER346
A	LYS347
A	HOH703
A	HOH704
A	HOH713
A	HOH772
B	LYS386
B	GLU479

---

site_id	AC3
Number of Residues	5
Details	binding site for residue SO4 A 603

Chain	Residue
A	HIS420
A	HIS421
A	HOH707
A	HOH822
A	HOH864

---

site_id	AC4
Number of Residues	5
Details	binding site for residue SO4 A 604

Chain	Residue
A	ARG475
A	ASP476
A	P5H601
A	HOH752
A	HOH820

---

site_id	AC5
Number of Residues	12
Details	binding site for residue P5H B 601

Chain	Residue
B	LYS361
B	ASN363
B	ASN367
B	TRP377
B	SER378
B	LEU380
B	TRP428
B	LEU430
B	MET434
B	ASP476
B	SO4605
B	HOH746

---

site_id	AC6
Number of Residues	8
Details	binding site for residue SO4 B 602

Chain	Residue
B	ARG451
B	GLU452
B	HOH714
B	HOH728
B	HOH747
B	HOH750
B	HOH770
B	HOH854

---

site_id	AC7
Number of Residues	4
Details	binding site for residue SO4 B 603

Chain	Residue
B	GLY344
B	LYS347
B	HOH701
B	HOH709

---

site_id	AC8
Number of Residues	5
Details	binding site for residue SO4 B 604

Chain	Residue
B	SER419
B	HIS420
B	HIS421
B	ARG451
B	HOH827

---

site_id	AC9
Number of Residues	7
Details	binding site for residue SO4 B 605

Chain	Residue
A	SER424
A	PRO425
B	ARG475
B	ASP476
B	P5H601
B	HOH759
B	HOH783

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	274
Details	Domain: {"description":"YTH","evidences":[{"source":"PROSITE-ProRule","id":"PRU00225","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---