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6YNJ

Crystal structure of YTHDC1 with compound DHU_DC1_046

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue P0N A 601
ChainResidue
AASN367
ASER378
ATRP428
APRO431
AMET434
ASER435
ALEU439
ASO4605
AHOH726

site_idAC2
Number of Residues5
Detailsbinding site for residue P0N A 602
ChainResidue
APRO464
ATRP465
BTYR350
BHIS427
BTRP428

site_idAC3
Number of Residues9
Detailsbinding site for residue SO4 A 603
ChainResidue
ALYS386
AGLN478
AGLU479
AHOH713
AHOH757
AHOH759
AHOH853
BLYS347
BHOH956

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 604
ChainResidue
AHIS420
AHIS421
AHOH748

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 A 605
ChainResidue
ASER362
AASN363
AASN364
AASN367
AARG404
AP0N601

site_idAC6
Number of Residues10
Detailsbinding site for residue P0N B 701
ChainResidue
BASN367
BSER378
BPRO431
BMET434
BSER435
BMET438
BLEU439
BSO4703
BHOH818
BHOH983

site_idAC7
Number of Residues8
Detailsbinding site for residue SO4 B 702
ChainResidue
BARG451
BGLU452
BHOH835
BHOH842
BHOH857
BHOH893
BHOH897
BHOH910

site_idAC8
Number of Residues5
Detailsbinding site for residue SO4 B 703
ChainResidue
BSER362
BASN363
BASN364
BASN367
BP0N701

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 B 704
ChainResidue
BLYS386
BGLU479
BHOH814
BHOH815

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 B 705
ChainResidue
BSER419
BHIS420
BHIS421
BARG451

site_idAD2
Number of Residues5
Detailsbinding site for residue SO4 B 706
ChainResidue
BARG404
BARG475
BASP476
BHOH807
BHOH882

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
BLYS361
BASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-08-07

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