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6YKZ

Crystal structure of YTHDC1 with compound DHU_DC1_234

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue OW8 A 601
ChainResidue
AASN363
AHOH716
AHOH748
AHOH764
AASN367
ATRP377
ASER378
ATRP428
APRO431
AMET434
ALEU439
AASP476

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 602
ChainResidue
AGLY344
ASER346
ALYS347
AHOH731
AHOH743
AHOH847

site_idAC3
Number of Residues11
Detailsbinding site for residue SO4 A 603
ChainResidue
ATRP465
AGLN478
AGLU479
AHOH704
AHOH758
AHOH762
AHOH785
AHOH796
AHOH853
BGLY344
BLYS347

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 604
ChainResidue
AARG404
AARG475
AASP476
AHOH723
AHOH759

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 605
ChainResidue
AHIS420
AHIS421

site_idAC6
Number of Residues8
Detailsbinding site for residue OW8 B 601
ChainResidue
BASN363
BASN367
BTRP377
BSER378
BTRP428
BASP476
BHOH734
BHOH793

site_idAC7
Number of Residues8
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG451
BGLU452
BHOH761
BHOH775
BHOH783
BHOH788
BHOH807
BHOH810

site_idAC8
Number of Residues7
Detailsbinding site for residue SO4 B 603
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BHOH736
BHOH767
BHOH897

site_idAC9
Number of Residues6
Detailsbinding site for residue SO4 B 604
ChainResidue
BLYS361
BARG404
BGLU405
BARG475
BHOH702
BHOH727

site_idAD1
Number of Residues5
Detailsbinding site for residue SO4 B 605
ChainResidue
BARG475
BASP476
BHOH757
BHOH766
BHOH825

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
BLYS361
BASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-07-17

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