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6YBM

Scaffold-ligand complex with ligand unmodelled.

Replaces:  6GJX
Functional Information from GO Data
ChainGOidnamespacecontents
A0000413biological_processprotein peptidyl-prolyl isomerization
A0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
A0006457biological_processprotein folding
B0000413biological_processprotein peptidyl-prolyl isomerization
B0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
B0006457biological_processprotein folding
C0000413biological_processprotein peptidyl-prolyl isomerization
C0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
C0006457biological_processprotein folding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue EDO A 201
ChainResidue
AASN13
ASER153
AHOH324
AHOH340
CLYS125
CARG151
CTHR152

site_idAC2
Number of Residues13
Detailsbinding site for residue CIT A 202
ChainResidue
AHOH302
AHOH307
AHOH308
AHOH317
AHOH321
AHOH346
AHOH350
BPRO105
CGLY104
CPRO105
CARG151
AARG151
ALYS155

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO C 201
ChainResidue
ASER147
AARG151
BLYS125
CASN13
CSER153
CHOH369
CHOH425

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO C 202
ChainResidue
CTYR79
CPRO84
CHOH370
CHOH372

Functional Information from PROSITE/UniProt
site_idPS00170
Number of Residues18
DetailsCSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgStFHRVIpsFMcQAG
ChainResidueDetails
ATYR48-GLY65

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues468
DetailsDomain: {"description":"PPIase cyclophilin-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00156","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues9
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues3
DetailsModified residue: {"description":"S-nitrosocysteine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

243911

PDB entries from 2025-10-29

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