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6YBM

Scaffold-ligand complex with ligand unmodelled.

Replaces:  6GJX
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2016-01-21
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97949
Spacegroup nameC 1 2 1
Unit cell lengths125.521, 58.635, 103.293
Unit cell angles90.00, 124.85, 90.00
Refinement procedure
Resolution62.700 - 1.410
R-factor0.1796
Rwork0.178
R-free0.21120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5cbt
RMSD bond length0.005
RMSD bond angle0.720
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]62.7001.450
High resolution limit [Å]1.4101.410
Rmerge0.043
Number of reflections1183578731
<I/σ(I)>9.6
Completeness [%]99.899.8
Redundancy3.2
CC(1/2)0.671
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 30% v/v (+/-)-2-Methyl-2,4-pentanediol

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